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Research

Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites

  • Kurt Patterson
  • Farbod Shavarebi
  • Christophe Magnan
  • Ivan Chang
  • Xiaojie Qi
  • Pierre Baldi
  • Virginia Bilanchone
  • Suzanne B. Sandmeyer
  • First Published June 27, 2019
Research

Retrotransposon profiling of RNA polymerase III initiation sites

  • Xiaojie Qi
  • Kenneth Daily
  • Kim Nguyen
  • Haoyi Wang
  • David Mayhew
  • Paul Rigor Sholeh Forouzan
  • ... [+2 authors] ...,
  • Mark Johnston
  • Robi David Mitra
  • Pierre Baldi
  • Suzanne Sandmeyer
  • First Published January 27, 2012
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
ARTICLE

Retroviruses and yeast retrotransposons use overlapping sets of host genes

  • Becky Irwin
  • Michael Aye
  • Pierre Baldi
  • Nadejda Beliakova-Bethell
  • Henry Cheng
  • Yimeng Dou
  • Willy Liou
  • Suzanne Sandmeyer
  • First Published April 18, 2005
ARTICLE

Mycoplasma mobile" > The Complete Genome and Proteome of Mycoplasma mobile

  • Jacob D. Jaffe
  • Nicole Stange-Thomann
  • Cherylyn Smith
  • David DeCaprio
  • Sheila Fisher
  • Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
  • ... [+10 authors] ...,
  • Chad Nusbaum
  • Bruce Birren
  • Howard C. Berg
  • George M. Church
  • First Published August 2, 2004
METHODS

LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics

  • Steve Hampson
  • Aoife McLysaght
  • Brandon Gaut
  • Pierre Baldi
  • First Published April 14, 2003
METHODS

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

  • David B. Jaffe
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Kerstin Lindblad-Toh
  • Jill P. Mesirov
  • Michael C. Zody
  • Eric S. Lander
  • First Published January 1, 2003
METHODS

ARACHNE: A Whole-Genome Shotgun Assembler

  • Serafim Batzoglou
  • David B. Jaffe
  • Ken Stanley
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Bonnie Berger
  • Jill P. Mesirov
  • Eric S. Lander
  • First Published January 1, 2002
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