Search | Genome Research

Your search for returned 30 results

Research

Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

Meng Wang
Yumei Li
Jun Wang
Soo Hwan Oh
Yexuan Cao
Rui Chen

First Published March 6, 2025

Method

CodonBERT large language model for mRNA vaccines

Sizhen Li
Saeed Moayedpour
Ruijiang Li
Michael Bailey
Saleh Riahi
Lorenzo Kogler-Anele Milad Miladi Jacob Miner Fabien Pertuy Dinghai Zheng Jun Wang Akshay Balsubramani Khang Tran Minnie Zacharia Monica Wu Xiaobo Gu Ryan Clinton Carla Asquith Joseph Skaleski Lianne Boeglin Sudha Chivukula Anusha Dias Tod Strugnell
... [+18 authors] ...,
Fernando Ulloa Montoya
Vikram Agarwal
Ziv Bar-Joseph
Sven Jager

First Published July 1, 2024

Research

Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity

Alexander Crits-Christoph
Nicholas Bhattacharya
Matthew R. Olm
Yun S. Song
Jillian F. Banfield

First Published December 23, 2020

Method

Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model

Li Tang
Matthew C. Hill
Jun Wang
Jianxin Wang
James F. Martin
Min Li

First Published November 12, 2020

Review

Accurate and complete genomes from metagenomes

Lin-Xing Chen
Karthik Anantharaman
Alon Shaiber
A. Murat Eren
Jillian F. Banfield

First Published March 18, 2020

Research

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

Daniela S. Aliaga Goltsman
Christine L. Sun
Diana M. Proctor
Daniel B. DiGiulio
Anna Robaczewska
Brian C. Thomas Gary M. Shaw
... [+2 authors] ...,
David K. Stevenson
Susan P. Holmes
Jillian F. Banfield
David A. Relman

First Published September 19, 2018

Method

Genome-reconstruction for eukaryotes from complex natural microbial communities

Patrick T. West
Alexander J. Probst
Igor V. Grigoriev
Brian C. Thomas
Jillian F. Banfield

First Published March 1, 2018

Resource

Assembly and analysis of 100 full MHC haplotypes from the Danish population

Jacob M. Jensen
Palle Villesen
Rune M. Friborg
Thomas Mailund
Søren Besenbacher
Mikkel H. Schierup Lasse Maretty Jacob Malte Jensen Bent Petersen Jonas Andreas Sibbesen Siyang Liu Palle Villesen Laurits Skov Kirstine Belling Christian Theil Have Jose M.G. Izarzugaza Marie Grosjean Jette Bork-Jensen Jakob Grove Thomas D. Als Shujia Huang Yuqi Chang Ruiqi Xu Weijian Ye Junhua Rao Xiaosen Guo Jihua Sun Hongzhi Cao Chen Ye Johan v Beusekom Thomas Espeseth Esben Flindt Rune M. Friborg Anders E. Halager Stephanie Le Hellard Christina M. Hultman Francesco Lescai Shengting Li Ole Lund Peter Løngren Thomas Mailund Maria Luisa Matey-Hernandez Ole Mors Christian N.S. Pedersen Thomas Sicheritz-Pontén Patrick Sullivan Ali Syed David Westergaard Rachita Yadav Ning Li Xun Xu Torben Hansen Anders Krogh Lars Bolund Thorkild I.A. Sørensen Oluf Pedersen Ramneek Gupta Simon Rasmussen Søren Besenbacher Anders D. Børglum Jun Wang
... [+56 authors] ...,
Hans Eiberg
Karsten Kristiansen
Søren Brunak
Mikkel Heide Schierup

First Published August 3, 2017

Research

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

Yue Shen
Giovanni Stracquadanio
Yun Wang
Kun Yang
Leslie A. Mitchell
Yaxin Xue Yizhi Cai Tai Chen Jessica S. Dymond Kang Kang Jianhui Gong Xiaofan Zeng Yongfen Zhang Yingrui Li Qiang Feng Xun Xu Jun Wang
... [+12 authors] ...,
Jian Wang
Huanming Yang
Jef D. Boeke
Joel S. Bader

First Published November 13, 2015

Research

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

Itai Sharon
Michael Kertesz
Laura A. Hug
Dmitry Pushkarev
Timothy A. Blauwkamp
Cindy J. Castelle Mojgan Amirebrahimi Brian C. Thomas
... [+3 authors] ...,
David Burstein
Susannah G. Tringe
Kenneth H. Williams
Jillian F. Banfield

First Published February 9, 2015

1
2
3