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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
Research

Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts

  • Tomasz W. Turowski
  • Ewa Leśniewska
  • Clementine Delan-Forino
  • Camille Sayou
  • Magdalena Boguta
  • David Tollervey
  • First Published May 20, 2016
Corrigendum

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

  • Keisha D. Carlson
  • Peter H. Sudmant
  • Maximilian O. Press
  • Evan E. Eichler
  • Jay Shendure
  • Christine Queitsch
  • First Published August 3, 2015
Research

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

  • Heather Fairfield
  • Anuj Srivastava
  • Guruprasad Ananda
  • Rangjiao Liu
  • Martin Kircher
  • Anuradha Lakshminarayana Belinda S. Harris Son Yong Karst Louise A. Dionne Coleen C. Kane Michelle Curtain Melissa L. Berry Patricia F. Ward-Bailey Ian Greenstein Candice Byers Anne Czechanski Jocelyn Sharp Kristina Palmer Polyxeni Gudis Whitney Martin Abby Tadenev Laurent Bogdanik C. Herbert Pratt Bo Chang David G. Schroeder Gregory A. Cox Paul Cliften Jeffrey Milbrandt Stephen Murray Robert Burgess David E. Bergstrom Leah Rae Donahue Hanan Hamamy Amira Masri Federico A. Santoni
  • ... [+30 authors] ...,
  • Periklis Makrythanasis
  • Stylianos E. Antonarakis
  • Jay Shendure
  • Laura G. Reinholdt
  • First Published April 27, 2015
Method

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

  • Keisha D. Carlson
  • Peter H. Sudmant
  • Maximilian O. Press
  • Evan E. Eichler
  • Jay Shendure
  • Christine Queitsch
  • First Published February 6, 2015
Research

Escherichia coli strains" > Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

  • Stephen J. Salipante
  • David J. Roach
  • Jacob O. Kitzman
  • Matthew W. Snyder
  • Bethany Stackhouse
  • Susan M. Butler-Wu
  • Choli Lee
  • Brad T. Cookson
  • Jay Shendure
  • First Published November 4, 2014
Method

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

  • Andrew Adey
  • Jacob O. Kitzman
  • Joshua N. Burton
  • Riza Daza
  • Akash Kumar
  • Lena Christiansen Mostafa Ronaghi
  • ... [+2 authors] ...,
  • Sasan Amini
  • Kevin L. Gunderson
  • Frank J. Steemers
  • Jay Shendure
  • First Published October 19, 2014
Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

  • Owen Thompson
  • Mark Edgley
  • Pnina Strasbourger
  • Stephane Flibotte
  • Brent Ewing
  • Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
  • ... [+13 authors] ...,
  • Emily H. Turner
  • LaDeana W. Hillier
  • Donald G. Moerman
  • Robert H. Waterston
  • First Published June 25, 2013
Method

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

  • Joseph B. Hiatt
  • Colin C. Pritchard
  • Stephen J. Salipante
  • Brian J. O'Roak
  • Jay Shendure
  • First Published February 4, 2013
Method

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

  • Andrew Adey
  • Jay Shendure
  • First Published March 30, 2012
Method

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection" > Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

  • Renee D. George
  • Graham McVicker
  • Rachel Diederich
  • Sarah B. Ng
  • Alexandra P. MacKenzie
  • Willie J. Swanson
  • Jay Shendure
  • James H. Thomas
  • First Published July 27, 2011
Research

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

  • Mario Ventura
  • Claudia R. Catacchio
  • Can Alkan
  • Tomas Marques-Bonet
  • Saba Sajjadian
  • Tina A. Graves Fereydoun Hormozdiari Arcadi Navarro Maika Malig Carl Baker Choli Lee Emily H. Turner Lin Chen Jeffrey M. Kidd
  • ... [+9 authors] ...,
  • Nicoletta Archidiacono
  • Jay Shendure
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published June 17, 2011
Method

Biome representational in silico karyotyping

  • Valliammai Muthappan
  • Aaron Y. Lee
  • Tamara L. Lamprecht
  • Lakshmi Akileswaran
  • Suzanne M. Dintzis
  • Choli Lee
  • ... [+1 authors] ...,
  • Vincent Magrini
  • Elaine R. Mardis
  • Jay Shendure
  • Russell N. Van Gelder
  • First Published February 10, 2011
Research

Global survey of escape from X inactivation by RNA-sequencing in mouse

  • Fan Yang
  • Tomas Babak
  • Jay Shendure
  • Christine M. Disteche
  • First Published April 2, 2010
Methods

Discovering functional transcription-factor combinations in the human cell cycle

  • Zhou Zhu
  • Jay Shendure
  • George M. Church
  • First Published June 1, 2005
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