Search | Genome Research

Multicondition and multimodal temporal profile inference during mouse embryonic development

Ran Zhang
Chengxiang Qiu
Galina N. Filippova
Gang Li
Jay Shendure
Jean-Philippe Vert
Xinxian Deng
William Stafford Noble
Christine M. Disteche

First Published August 14, 2025

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Timothy J. Durham
Riza M. Daza
Louis Gevirtzman
Darren A. Cusanovich
Olubusayo Bolonduro
William Stafford Noble
Jay Shendure
Robert H. Waterston

First Published April 22, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Brian S. Roberts
E. Christopher Partridge
Bryan A. Moyers
Vikram Agarwal
Kimberly M. Newberry
Beth K. Martin
Jay Shendure
Richard M. Myers
Gregory M. Cooper

First Published April 20, 2021

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations

Ryne C. Ramaker
Andrew A. Hardigan
Say-Tar Goh
E. Christopher Partridge
Barbara Wold
Sara J. Cooper
Richard M. Myers

First Published July 2, 2020

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

Adebola Enikanolaiye
Julie Ruston
Rong Zeng
Christine Taylor
Marijke Schrock
Christie M. Buchovecky
Jay Shendure
Elif Acar
Monica J. Justice

First Published April 21, 2020

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published May 1, 2018

A genome-wide interactome of DNA-associated proteins in the human liver

Ryne C. Ramaker
Daniel Savic
Andrew A. Hardigan
Kimberly Newberry
Gregory M. Cooper
Richard M. Myers
Sara J. Cooper

First Published October 11, 2017

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published November 9, 2016

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published August 3, 2015

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

Heather Fairfield
Anuj Srivastava
Guruprasad Ananda
Rangjiao Liu
Martin Kircher
Anuradha Lakshminarayana Belinda S. Harris Son Yong Karst Louise A. Dionne Coleen C. Kane Michelle Curtain Melissa L. Berry Patricia F. Ward-Bailey Ian Greenstein Candice Byers Anne Czechanski Jocelyn Sharp Kristina Palmer Polyxeni Gudis Whitney Martin Abby Tadenev Laurent Bogdanik C. Herbert Pratt Bo Chang David G. Schroeder Gregory A. Cox Paul Cliften Jeffrey Milbrandt Stephen Murray Robert Burgess David E. Bergstrom Leah Rae Donahue Hanan Hamamy Amira Masri Federico A. Santoni
... [+30 authors] ...,
Periklis Makrythanasis
Stylianos E. Antonarakis
Jay Shendure
Laura G. Reinholdt

First Published April 27, 2015

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published February 6, 2015

Escherichia coli strains" > Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

Stephen J. Salipante
David J. Roach
Jacob O. Kitzman
Matthew W. Snyder
Bethany Stackhouse
Susan M. Butler-Wu
Choli Lee
Brad T. Cookson
Jay Shendure

First Published November 4, 2014

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Andrew Adey
Jacob O. Kitzman
Joshua N. Burton
Riza Daza
Akash Kumar
Lena Christiansen Mostafa Ronaghi
... [+2 authors] ...,
Sasan Amini
Kevin L. Gunderson
Frank J. Steemers
Jay Shendure

First Published October 19, 2014

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Owen Thompson
Mark Edgley
Pnina Strasbourger
Stephane Flibotte
Brent Ewing
Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
... [+13 authors] ...,
Emily H. Turner
LaDeana W. Hillier
Donald G. Moerman
Robert H. Waterston

First Published June 25, 2013

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

Daniel A. Skelly
Gennifer E. Merrihew
Michael Riffle
Caitlin F. Connelly
Emily O. Kerr
Marnie Johansson Daniel Jaschob Beth Graczyk Nicholas J. Shulman Jon Wakefield Sara J. Cooper Stanley Fields William S. Noble Eric G.D. Muller
... [+9 authors] ...,
Trisha N. Davis
Maitreya J. Dunham
Michael J. MacCoss
Joshua M. Akey

First Published May 29, 2013

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

Joseph B. Hiatt
Colin C. Pritchard
Stephen J. Salipante
Brian J. O'Roak
Jay Shendure

First Published February 4, 2013

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

Andrew Adey
Jay Shendure

First Published March 30, 2012

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection" > Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Renee D. George
Graham McVicker
Rachel Diederich
Sarah B. Ng
Alexandra P. MacKenzie
Willie J. Swanson
Jay Shendure
James H. Thomas

First Published July 27, 2011

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Mario Ventura
Claudia R. Catacchio
Can Alkan
Tomas Marques-Bonet
Saba Sajjadian
Tina A. Graves Fereydoun Hormozdiari Arcadi Navarro Maika Malig Carl Baker Choli Lee Emily H. Turner Lin Chen Jeffrey M. Kidd
... [+9 authors] ...,
Nicoletta Archidiacono
Jay Shendure
Richard K. Wilson
Evan E. Eichler

First Published June 17, 2011

Biome representational in silico karyotyping

Valliammai Muthappan
Aaron Y. Lee
Tamara L. Lamprecht
Lakshmi Akileswaran
Suzanne M. Dintzis
Choli Lee
... [+1 authors] ...,
Vincent Magrini
Elaine R. Mardis
Jay Shendure
Russell N. Van Gelder

First Published February 10, 2011

Saccharomyces cerevisiae deletion collection" > High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection

Sara J. Cooper
Gregory L. Finney
Shauna L. Brown
Sven K. Nelson
Jay Hesselberth
Michael J. MacCoss
Stanley Fields

First Published July 7, 2010

Global survey of escape from X inactivation by RNA-sequencing in mouse

Fan Yang
Tomas Babak
Jay Shendure
Christine M. Disteche

First Published April 2, 2010

Serum response factor binding sites differ in three human cell types

Sara J. Cooper
Nathan D. Trinklein
Loan Nguyen
Richard M. Myers

First Published January 2, 2007

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

Sara J. Cooper
Nathan D. Trinklein
Elizabeth D. Anton
Loan Nguyen
Richard M. Myers

First Published December 12, 2005

Discovering functional transcription-factor combinations in the human cell cycle

Zhou Zhu
Jay Shendure
George M. Church

First Published June 1, 2005

Direct isolation and identification of promoters in the human genome

Tae Hoon Kim
Leah O. Barrera
Chunxu Qu
Sara Van Calcar
Nathan D. Trinklein
Sara J. Cooper Rosa M. Luna
... [+2 authors] ...,
Christopher K. Glass
Michael G. Rosenfeld
Richard M. Myers
Bing Ren

First Published May 17, 2005

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Your search for returned 26 results

Multicondition and multimodal temporal profile inference during mouse embryonic development

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

A genome-wide interactome of DNA-associated proteins in the human liver

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Escherichia coli strains" > Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection" > Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Biome representational in silico karyotyping

Saccharomyces cerevisiae deletion collection" > High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection

Global survey of escape from X inactivation by RNA-sequencing in mouse

Serum response factor binding sites differ in three human cell types

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

Discovering functional transcription-factor combinations in the human cell cycle

Direct isolation and identification of promoters in the human genome

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Your search for returned 26 results