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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

The rate and spectrum of new mutations in mice inferred by long-read sequencing

  • Eugenio López-Cortegano
  • Jobran Chebib
  • Anika Jonas
  • Anastasia Vock
  • Sven Künzel
  • Peter D. Keightley
  • Diethard Tautz
  • First Published December 2, 2024
Research

Drosophila melanogaster and Drosophila simulans" > Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans

  • Yiguan Wang
  • Paul McNeil
  • Rashidatu Abdulazeez
  • Marta Pascual
  • Susan E. Johnston
  • Peter D. Keightley
  • Darren J. Obbard
  • First Published April 10, 2023
Research

Chlamydomonas reinhardtii" > Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii

  • Eugenio López-Cortegano
  • Rory J. Craig
  • Jobran Chebib
  • Eniolaye J. Balogun
  • Peter D. Keightley
  • First Published December 12, 2022
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
Research

Chlamydomonas reinhardtii" > Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii

  • Rob W. Ness
  • Andrew D. Morgan
  • Radhakrishnan B. Vasanthakrishnan
  • Nick Colegrave
  • Peter D. Keightley
  • First Published August 10, 2015
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