Search | Genome Research

Multicondition and multimodal temporal profile inference during mouse embryonic development

Ran Zhang
Chengxiang Qiu
Galina N. Filippova
Gang Li
Jay Shendure
Jean-Philippe Vert
Xinxian Deng
William Stafford Noble
Christine M. Disteche

First Published August 14, 2025

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Timothy J. Durham
Riza M. Daza
Louis Gevirtzman
Darren A. Cusanovich
Olubusayo Bolonduro
William Stafford Noble
Jay Shendure
Robert H. Waterston

First Published April 22, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Brian S. Roberts
E. Christopher Partridge
Bryan A. Moyers
Vikram Agarwal
Kimberly M. Newberry
Beth K. Martin
Jay Shendure
Richard M. Myers
Gregory M. Cooper

First Published April 20, 2021

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

Adebola Enikanolaiye
Julie Ruston
Rong Zeng
Christine Taylor
Marijke Schrock
Christie M. Buchovecky
Jay Shendure
Elif Acar
Monica J. Justice

First Published April 21, 2020

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published May 1, 2018

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published November 9, 2016

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published August 3, 2015

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

Heather Fairfield
Anuj Srivastava
Guruprasad Ananda
Rangjiao Liu
Martin Kircher
Anuradha Lakshminarayana Belinda S. Harris Son Yong Karst Louise A. Dionne Coleen C. Kane Michelle Curtain Melissa L. Berry Patricia F. Ward-Bailey Ian Greenstein Candice Byers Anne Czechanski Jocelyn Sharp Kristina Palmer Polyxeni Gudis Whitney Martin Abby Tadenev Laurent Bogdanik C. Herbert Pratt Bo Chang David G. Schroeder Gregory A. Cox Paul Cliften Jeffrey Milbrandt Stephen Murray Robert Burgess David E. Bergstrom Leah Rae Donahue Hanan Hamamy Amira Masri Federico A. Santoni
... [+30 authors] ...,
Periklis Makrythanasis
Stylianos E. Antonarakis
Jay Shendure
Laura G. Reinholdt

First Published April 27, 2015

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published February 6, 2015

Escherichia coli strains" > Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

Stephen J. Salipante
David J. Roach
Jacob O. Kitzman
Matthew W. Snyder
Bethany Stackhouse
Susan M. Butler-Wu
Choli Lee
Brad T. Cookson
Jay Shendure

First Published November 4, 2014

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Andrew Adey
Jacob O. Kitzman
Joshua N. Burton
Riza Daza
Akash Kumar
Lena Christiansen Mostafa Ronaghi
... [+2 authors] ...,
Sasan Amini
Kevin L. Gunderson
Frank J. Steemers
Jay Shendure

First Published October 19, 2014

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Owen Thompson
Mark Edgley
Pnina Strasbourger
Stephane Flibotte
Brent Ewing
Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
... [+13 authors] ...,
Emily H. Turner
LaDeana W. Hillier
Donald G. Moerman
Robert H. Waterston

First Published June 25, 2013

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

Joseph B. Hiatt
Colin C. Pritchard
Stephen J. Salipante
Brian J. O'Roak
Jay Shendure

First Published February 4, 2013

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

Andrew Adey
Jay Shendure

First Published March 30, 2012

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection" > Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Renee D. George
Graham McVicker
Rachel Diederich
Sarah B. Ng
Alexandra P. MacKenzie
Willie J. Swanson
Jay Shendure
James H. Thomas

First Published July 27, 2011

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Mario Ventura
Claudia R. Catacchio
Can Alkan
Tomas Marques-Bonet
Saba Sajjadian
Tina A. Graves Fereydoun Hormozdiari Arcadi Navarro Maika Malig Carl Baker Choli Lee Emily H. Turner Lin Chen Jeffrey M. Kidd
... [+9 authors] ...,
Nicoletta Archidiacono
Jay Shendure
Richard K. Wilson
Evan E. Eichler

First Published June 17, 2011

Biome representational in silico karyotyping

Valliammai Muthappan
Aaron Y. Lee
Tamara L. Lamprecht
Lakshmi Akileswaran
Suzanne M. Dintzis
Choli Lee
... [+1 authors] ...,
Vincent Magrini
Elaine R. Mardis
Jay Shendure
Russell N. Van Gelder

First Published February 10, 2011

Global survey of escape from X inactivation by RNA-sequencing in mouse

Fan Yang
Tomas Babak
Jay Shendure
Christine M. Disteche

First Published April 2, 2010

Discovering functional transcription-factor combinations in the human cell cycle

Zhou Zhu
Jay Shendure
George M. Church

First Published June 1, 2005

Lane tracking software for four-color fluorescence-based electrophoretic gel images.

M L Cooper
D R Maffitt
J D Parsons
L Hillier
D J States

First Published November 1, 1996

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Your search for returned 20 results

Multicondition and multimodal temporal profile inference during mouse embryonic development

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Escherichia coli strains" > Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection" > Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Biome representational in silico karyotyping

Global survey of escape from X inactivation by RNA-sequencing in mouse

Discovering functional transcription-factor combinations in the human cell cycle

Lane tracking software for four-color fluorescence-based electrophoretic gel images.

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Your search for returned 20 results