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Research

3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA

  • Shuhei Mitsutomi
  • Anzu Sugawara
  • Masahide Seki
  • Yutaka Suzuki
  • Sotaro Miyao
  • Haozhe Du
  • ... [+1 authors] ...,
  • Kenji Takahashi
  • Yusuke Mizukami
  • Kenzui Taniue
  • Nobuyoshi Akimitsu
  • First Published October 30, 2025
Method

Deciphering context-specific gene programs from single-cell and spatial transcriptomics data with DeCEP

  • Lin Li
  • Xianbin Su
  • Ze-Guang Han
  • First Published August 21, 2025
Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

  • Kazumasa Shirai
  • Mitsuhiko P. Sato
  • Ranko Nishi
  • Masahide Seki
  • Yutaka Suzuki
  • Kousuke Hanada
  • First Published May 18, 2021
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Long-read sequencing for non-small-cell lung cancer genomes

  • Yoshitaka Sakamoto
  • Liu Xu
  • Masahide Seki
  • Toshiyuki T. Yokoyama
  • Masahiro Kasahara
  • Yukie Kashima Akihiro Ohashi Yoko Shimada Noriko Motoi Katsuya Tsuchihara Susumu S. Kobayashi
  • ... [+6 authors] ...,
  • Takashi Kohno
  • Yuichi Shiraishi
  • Ayako Suzuki
  • Yutaka Suzuki
  • First Published September 4, 2020
Method

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

  • Kentaro Kawata
  • Hiroyasu Wakida
  • Toshimichi Yamada
  • Kenzui Taniue
  • Han Han
  • Masahide Seki
  • Yutaka Suzuki
  • Nobuyoshi Akimitsu
  • First Published August 25, 2020
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Research

A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

  • Steffen Knauer
  • Marie Javelle
  • Lin Li
  • Xianran Li
  • Xiaoli Ma
  • Kokulapalan Wimalanathan Sunita Kumari Robyn Johnston Samuel Leiboff Robert Meeley Patrick S. Schnable Doreen Ware Carolyn Lawrence-Dill
  • ... [+8 authors] ...,
  • Jianming Yu
  • Gary J. Muehlbauer
  • Michael J. Scanlon
  • Marja C.P. Timmermans
  • First Published November 19, 2019
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