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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements

  • Luis E. Valentin-Alvarado
  • Ling-Dong Shi
  • Kathryn E. Appler
  • Alexander Crits-Christoph
  • Valerie De Anda
  • Benjamin A. Adler Michael L. Cui Lynn Ly Pedro Leão Richard J. Roberts
  • ... [+5 authors] ...,
  • Rohan Sachdeva
  • Brett J. Baker
  • David F. Savage
  • Jillian F. Banfield
  • First Published October 15, 2024
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity

  • Alexander Crits-Christoph
  • Nicholas Bhattacharya
  • Matthew R. Olm
  • Yun S. Song
  • Jillian F. Banfield
  • First Published December 23, 2020
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Review

Accurate and complete genomes from metagenomes

  • Lin-Xing Chen
  • Karthik Anantharaman
  • Alon Shaiber
  • A. Murat Eren
  • Jillian F. Banfield
  • First Published March 18, 2020
Research

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

  • Daniela S. Aliaga Goltsman
  • Christine L. Sun
  • Diana M. Proctor
  • Daniel B. DiGiulio
  • Anna Robaczewska
  • Brian C. Thomas Gary M. Shaw
  • ... [+2 authors] ...,
  • David K. Stevenson
  • Susan P. Holmes
  • Jillian F. Banfield
  • David A. Relman
  • First Published September 19, 2018
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Method

Genome-reconstruction for eukaryotes from complex natural microbial communities

  • Patrick T. West
  • Alexander J. Probst
  • Igor V. Grigoriev
  • Brian C. Thomas
  • Jillian F. Banfield
  • First Published March 1, 2018
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