Search | Genome Research

Research

The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome

Young-Lim Lee
Aniek C. Bouwman
Chad Harland
Mirte Bosse
Gabriel Costa Monteiro Moreira
Roel F. Veerkamp Erik Mullaart Nadine Cambisano Martien A.M. Groenen
... [+4 authors] ...,
Latifa Karim
Wouter Coppieters
Michel Georges
Carole Charlier

First Published October 4, 2023

Resource

An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants

Can Yuan
Lijing Tang
Thomas Lopdell
Vyacheslav A. Petrov
Claire Oget-Ebrad
Gabriel Costa Monteiro Moreira José Luis Gualdrón Duarte Arnaud Sartelet Zhangrui Cheng Mazdak Salavati D. Claire Wathes Mark A. Crowe Wouter Coppieters Mathew Littlejohn Carole Charlier Tom Druet Michel Georges Haruko Takeda Mark Crowe Niamh McLoughlin Alan Fahey Elizabeth Matthews Andreia Santoro Colin Byrne Pauline Rudd Roisin O'Flaherty Sinead Hallinan Claire Wathes Zhangrui Cheng Ali Fouladi Geoff Pollott Dirk Werling Beatriz Sanz Bernardo Mazdak Salavati Laura Buggiotti Alistair Wylie Matt Bell Conrad Ferris Mieke Vaneetvelde Kristof Hermans Geert Opsomer Sander Moerman Jenne De Koster Hannes Bogaert Jan Vandepitte Leila Vandevelde Bonny Vanranst Johanna Hoglund Susanne Dahl Klaus Ingvartsen Martin Sørensen Leslie Foldager Soren Ostergaard Janne Rothmann Mogens Krogh Else Meyer Charlotte Gaillard Jehan Ettema Tine Rousing Federica Signorelli Francesco Napolitano Bianca Moioli Alessandra Crisa Luca Buttazzoni Jennifer McClure Daragh Matthews Francis Kearney Andrew Cromie Matt McClure Shujun Zhang Xing Chen Huanchun Chen Junlong Zhao Liguo Yang Guohua Hua Chen Tan Guiqiang Wang Michel Bonneau Andrea Pompozzi Armin Pearn Arnold Evertson Linda Kosten Anders Fogh Thomas Andersen Matthew Lucy Chris Elsik Gavin Conant Jerry Taylor Nicolas Gengler Michel Georges Frederic Colinet Marilou Ramos Pamplona Hedi Hammami Catherine Bastin Haruko Takeda Aurelie Laine
... [+91 authors] ...,
Lijing Tang
Martin Schulze
Cinzia Marchitelli
Sergio Palma-Vera

First Published September 26, 2023

Method

SNP-based quantitative deconvolution of biological mixtures: application to the detection of cows with subclinical mastitis by whole-genome sequencing of tank milk

Wouter Coppieters
Latifa Karim
Michel Georges

First Published June 26, 2020

Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Valerie A. Schneider
Tina Graves-Lindsay
Kerstin Howe
Nathan Bouk
Hsiu-Chuan Chen
Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
... [+29 authors] ...,
Richard K. Wilson
Paul Flicek
Evan E. Eichler
Deanna M. Church

First Published April 10, 2017

Method

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Dirk D. Dolle
Zhicheng Liu
Matthew Cotten
Jared T. Simpson
Zamin Iqbal
Richard Durbin
Shane A. McCarthy
Thomas M. Keane

First Published December 16, 2016

Research

NGS-based reverse genetic screen for common embryonic lethal mutations compromising fertility in livestock

Carole Charlier
Wanbo Li
Chad Harland
Mathew Littlejohn
Wouter Coppieters
Frances Creagh Steve Davis Tom Druet Pierre Faux François Guillaume Latifa Karim Mike Keehan
... [+7 authors] ...,
Naveen Kumar Kadri
Nico Tamma
Richard Spelman
Michel Georges

First Published September 19, 2016

Research

HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle" > Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle

Naveen Kumar Kadri
Chad Harland
Pierre Faux
Nadine Cambisano
Latifa Karim
Wouter Coppieters Sébastien Fritz Erik Mullaart Denis Baurain Didier Boichard
... [+5 authors] ...,
Richard Spelman
Carole Charlier
Michel Georges
Tom Druet

First Published August 11, 2016

Resource

Efficient de novo assembly of large genomes using compressed data structures

Jared T. Simpson
Richard Durbin

First Published December 7, 2011

Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent Earl
Keith Bradnam
John St. John
Aaron Darling
Dawei Lin
Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
... [+62 authors] ...,
Richard E. Green
David Haussler
Ian Korf
Benedict Paten

First Published September 16, 2011

Method

Revealing the genetic structure of a trait by sequencing a population under selection

Leopold Parts
Francisco A. Cubillos
Jonas Warringer
Kanika Jain
Francisco Salinas
Suzannah J. Bumpstead Mikael Molin Amin Zia Jared T. Simpson Michael A. Quail
... [+5 authors] ...,
Alan Moses
Edward J. Louis
Richard Durbin
Gianni Liti

First Published March 21, 2011

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Your search for returned 14 results

Research

The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome

Resource

An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants

Method

SNP-based quantitative deconvolution of biological mixtures: application to the detection of cows with subclinical mastitis by whole-genome sequencing of tank milk

Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Method

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Research

NGS-based reverse genetic screen for common embryonic lethal mutations compromising fertility in livestock

Research

HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle" > Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle

Resource

Efficient de novo assembly of large genomes using compressed data structures

Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Method

Revealing the genetic structure of a trait by sequencing a population under selection

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