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Method

Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data

  • Li Song
  • Gali Bai
  • X. Shirley Liu
  • Bo Li
  • Heng Li
  • First Published May 11, 2023
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

cis-regulation with a compendium of genome-wide histone H3K27ac profiles" > Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles

  • Su Wang
  • Chongzhi Zang
  • Tengfei Xiao
  • Jingyu Fan
  • Shenglin Mei
  • Qian Qin Qiu Wu Xujuan Li Kexin Xu
  • ... [+4 authors] ...,
  • Housheng Hansen He
  • Myles Brown
  • Clifford A. Meyer
  • X. Shirley Liu
  • First Published July 27, 2016
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Sequence determinants of improved CRISPR sgRNA design

  • Han Xu
  • Tengfei Xiao
  • Chen-Hao Chen
  • Wei Li
  • Clifford A. Meyer
  • Qiu Wu Di Wu Le Cong
  • ... [+3 authors] ...,
  • Feng Zhang
  • Jun S. Liu
  • Myles Brown
  • X. Shirley Liu
  • First Published June 10, 2015
Research

Canonical nucleosome organization at promoters forms during genome activation

  • Yong Zhang
  • Nadine L. Vastenhouw
  • Jianxing Feng
  • Kai Fu
  • Chenfei Wang
  • Ying Ge
  • ... [+1 authors] ...,
  • Andrea Pauli
  • Paul van Hummelen
  • Alexander F. Schier
  • X. Shirley Liu
  • First Published November 27, 2013
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Research

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

  • Housheng Hansen He
  • Clifford A. Meyer
  • Mei Wei Chen
  • V. Craig Jordan
  • Myles Brown
  • X. Shirley Liu
  • First Published April 16, 2012
Research

C. elegans" > Broad chromosomal domains of histone modification patterns in C. elegans

  • Tao Liu
  • Andreas Rechtsteiner
  • Thea A. Egelhofer
  • Anne Vielle
  • Isabel Latorre
  • Ming-Sin Cheung Sevinc Ercan Kohta Ikegami Morten Jensen Paulina Kolasinska-Zwierz Heidi Rosenbaum Hyunjin Shin Scott Taing Teruaki Takasaki A. Leonardo Iniguez Arshad Desai Abby F. Dernburg Hiroshi Kimura
  • ... [+13 authors] ...,
  • Jason D. Lieb
  • Julie Ahringer
  • Susan Strome
  • X. Shirley Liu
  • First Published December 22, 2010
Method

Gene expression profiling of human breast tissue samples using SAGE-Seq

  • Zhenhua Jeremy Wu
  • Clifford A. Meyer
  • Sibgat Choudhury
  • Michail Shipitsin
  • Reo Maruyama
  • Marina Bessarabova Tatiana Nikolskaya Saraswati Sukumar
  • ... [+3 authors] ...,
  • Armin Schwartzman
  • Jun S. Liu
  • Kornelia Polyak
  • X. Shirley Liu
  • First Published November 2, 2010
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