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An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells

  • Zhizhuo Zhang
  • Kern Rei Chng
  • Shreyas Lingadahalli
  • Zikai Chen
  • Mei Hui Liu
  • Huy Hoang Do Shaojiang Cai Nicola Rinaldi Huay Mei Poh Guoliang Li Ying Ying Sung Charlie L. Heng Leighton J. Core Si Kee Tan Xiaoan Ruan John T. Lis
  • ... [+11 authors] ...,
  • Manolis Kellis
  • Yijun Ruan
  • Wing-Kin Sung
  • Edwin Cheung
  • First Published January 3, 2019

Systems consequences of amplicon formation in human breast cancer

  • Koichiro Inaki
  • Francesca Menghi
  • Xing Yi Woo
  • Joel P. Wagner
  • Pierre-Étienne Jacques
  • Yi Fang Lee Phung Trang Shreckengast Wendy WeiJia Soon Ankit Malhotra Audrey S.M. Teo Axel M. Hillmer Alexis Jiaying Khng Xiaoan Ruan Swee Hoe Ong Denis Bertrand
  • ... [+10 authors] ...,
  • Niranjan Nagarajan
  • R. Krishna Murthy Karuturi
  • Alfredo Hidalgo Miranda
  • Edison T. Liu
  • First Published September 3, 2014

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012

Transcriptional consequences of genomic structural aberrations in breast cancer

  • Koichiro Inaki
  • Axel M. Hillmer
  • Leena Ukil
  • Fei Yao
  • Xing Yi Woo
  • Leah A. Vardy Kelson Folkvard Braaten Zawack Charlie Wah Heng Lee Pramila Nuwantha Ariyaratne Yang Sun Chan Kartiki Vasant Desai Jonas Bergh Per Hall Thomas Choudary Putti Wai Loon Ong Atif Shahab Valere Cacheux-Rataboul Radha Krishna Murthy Karuturi Wing-Kin Sung
  • ... [+14 authors] ...,
  • Xiaoan Ruan
  • Guillaume Bourque
  • Yijun Ruan
  • Edison T. Liu
  • First Published April 5, 2011

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

  • Axel M. Hillmer
  • Fei Yao
  • Koichiro Inaki
  • Wah Heng Lee
  • Pramila N. Ariyaratne
  • Audrey S.M. Teo Xing Yi Woo Zhenshui Zhang Hao Zhao Leena Ukil Jieqi P. Chen Feng Zhu Jimmy B.Y. So Manuel Salto-Tellez Wan Ting Poh Kelson F.B. Zawack Niranjan Nagarajan Song Gao Guoliang Li Vikrant Kumar Hui Ping J. Lim Yee Yen Sia Chee Seng Chan See Ting Leong Say Chuan Neo Poh Sum D. Choi Hervé Thoreau Patrick B.O. Tan Atif Shahab Xiaoan Ruan Jonas Bergh Per Hall Valère Cacheux-Rataboul Chia-Lin Wei Khay Guan Yeoh
  • ... [+30 authors] ...,
  • Wing-Kin Sung
  • Guillaume Bourque
  • Edison T. Liu
  • Yijun Ruan
  • First Published April 5, 2011

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008

Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications" > Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

  • Pierre Hilson
  • Joke Allemeersch
  • Thomas Altmann
  • Sébastien Aubourg
  • Alexandra Avon
  • Jim Beynon Rishikesh P. Bhalerao Frédérique Bitton Michel Caboche Bernard Cannoot Vasil Chardakov Cécile Cognet-Holliger Vincent Colot Mark Crowe Caroline Darimont Steffen Durinck Holger Eickhoff Andéol Falcon de Longevialle Edward E. Farmer Murray Grant Martin T.R. Kuiper Hans Lehrach Céline Léon Antonio Leyva Joakim Lundeberg Claire Lurin Yves Moreau Wilfried Nietfeld Javier Paz-Ares Philippe Reymond Pierre Rouzé Goran Sandberg Maria Dolores Segura Carine Serizet Alexandra Tabrett Ludivine Taconnat Vincent Thareau Paul Van Hummelen Steven Vercruysse Marnik Vuylsteke Magdalena Weingartner Peter J. Weisbeek
  • ... [+37 authors] ...,
  • Valtteri Wirta
  • Floyd R.A. Wittink
  • Marc Zabeau
  • Ian Small
  • First Published October 15, 2004

Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome

  • Pascal Kahlem
  • Marc Sultan
  • Ralf Herwig
  • Matthias Steinfath
  • Daniela Balzereit
  • Barbara Eppens Nidhi G. Saran Mathew T. Pletcher Sarah T. South
  • ... [+4 authors] ...,
  • Gail Stetten
  • Hans Lehrach
  • Roger H. Reeves
  • Marie-Laure Yaspo
  • First Published July 1, 2004
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