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Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Resource

Digital expression profiling of the compartmentalized translatome of Purkinje neurons

Anton Kratz
Pascal Beguin
Megumi Kaneko
Takahiko Chimura
Ana Maria Suzuki
Atsuko Matsunaga Sachi Kato Nicolas Bertin Timo Lassmann
... [+4 authors] ...,
Réjan Vigot
Piero Carninci
Charles Plessy
Thomas Launey

First Published June 5, 2014

Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Thomas Derrien
Rory Johnson
Giovanni Bussotti
Andrea Tanzer
Sarah Djebali
Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
... [+18 authors] ...,
Tim J. Hubbard
Cedric Notredame
Jennifer Harrow
Roderic Guigó

First Published September 5, 2012

Method

Unamplified cap analysis of gene expression on a single-molecule sequencer

Mutsumi Kanamori-Katayama
Masayoshi Itoh
Hideya Kawaji
Timo Lassmann
Shintaro Katayama
Miki Kojima Nicolas Bertin Ai Kaiho Noriko Ninomiya
... [+4 authors] ...,
Carsten O. Daub
Piero Carninci
Alistair R.R. Forrest
Yoshihide Hayashizaki

First Published May 19, 2011

Research

Drosophila melanogaster" > Genome-wide analysis of promoter architecture in Drosophila melanogaster

Roger A. Hoskins
Jane M. Landolin
James B. Brown
Jeremy E. Sandler
Hazuki Takahashi
Timo Lassmann Charles Yu Benjamin W. Booth Dayu Zhang Kenneth H. Wan Li Yang Nathan Boley Justen Andrews Thomas C. Kaufman Brenton R. Graveley
... [+10 authors] ...,
Peter J. Bickel
Piero Carninci
Joseph W. Carlson
Susan E. Celniker

First Published December 22, 2010

Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

Lukas Chavez
Justyna Jozefczuk
Christina Grimm
Jörn Dietrich
Bernd Timmermann
Hans Lehrach
Ralf Herwig
James Adjaye

First Published August 27, 2010

Methods

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

Michiel J.L. de Hoon
Ryan J. Taft
Takehiro Hashimoto
Mutsumi Kanamori-Katayama
Hideya Kawaji
Mitsuoki Kawano Mami Kishima Timo Lassmann Geoffrey J. Faulkner John S. Mattick Carsten O. Daub
... [+6 authors] ...,
Piero Carninci
Jun Kawai
Harukazu Suzuki
Yoshihide Hayashizaki

First Published January 5, 2010

Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

Andrew L. Hufton
Susanne Mathia
Helene Braun
Udo Georgi
Hans Lehrach
Martin Vingron
Albert J. Poustka
Georgia Panopoulou

First Published August 24, 2009

LETTER

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

Andrew L. Hufton
Detlef Groth
Martin Vingron
Hans Lehrach
Albert J. Poustka
Georgia Panopoulou

First Published July 14, 2008

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