Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Research
De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
- First Published June 28, 2013
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Method
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- First Published August 30, 2012
Resource
Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines
- First Published December 22, 2010
Method
Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
- First Published August 27, 2010
Letter
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
- First Published August 24, 2009
LETTER
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
- First Published July 14, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
LETTER
Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
- First Published January 29, 2008
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
- First Published July 5, 2005
LETTER
Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome
- First Published July 1, 2004
RESOURCE
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
- First Published April 1, 2004
LETTER
The Genomic Sequence and Comparative Analysis of the Rat Major Histocompatibility Complex
- First Published April 1, 2004
ARTICLE
Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
- First Published March 1, 2004
RESOURCE
Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters
- First Published December 1, 2003
Methods
Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes
- First Published December 1, 2003
ARTICLE
New Evidence for Genome-Wide Duplications at the Origin of Vertebrates Using an Amphioxus Gene Set and Completed Animal Genomes
- First Published June 1, 2003
METHODS
A Human cDNA Expression Library in Yeast Enriched for Open Reading Frames
- First Published September 20, 2001
RESOURCE
An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library
- First Published August 16, 2001
METHODS
Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation
- First Published July 12, 2001
LETTER
Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis
- First Published April 1, 2001
METHODS
Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data
- First Published November 21, 2000
METHODS
Tissue Gene Expression Analysis Using Arrayed Normalized cDNA Libraries
- First Published August 1, 2000
RESOURCE
Panel of Microsatellite Markers for Whole-Genome Scans and Radiation Hybrid Mapping and a Mouse Family Tree
- First Published September 1, 1999
LETTER
A Contiguous 3-Mb Sequence-Ready Map in the S3–MX Region on 21q22.2 Based on High- Throughput Nonisotopic Library Screenings
- First Published April 1, 1999
RESEARCH
Estimation of Distances and Map Construction Using Radiation Hybrids
- First Published May 1, 1998
LETTER
Bacterial Contig Map of the 21q11 Region Associated with Alzheimer’s Disease and Abnormal Myelopoiesis in Down Syndrome
- First Published April 1, 1998