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Resource

The PanOryza pangene catalog of Asian cultivated rice

  • Bruno Contreras-Moreira
  • Eshan Sharma
  • Shradha Saraf
  • Guy Naamati
  • Parul Gupta
  • Justin Elser Dmytro Chebotarov Kapeel Chougule Zhenyuan Lu Sharon Wei Andrew Olson Ian Tsang Disha Lodha Yong Zhou Zhichao Yu Wen Zhao Jianwei Zhang Sandeep Amberkar Kawinnat Sue-Ob Zhi Sun Maria Martin Kenneth L. McNally Doreen Ware Eric W. Deutsch Dario Copetti
  • ... [+20 authors] ...,
  • Rod A. Wing
  • Pankaj Jaiswal
  • Sarah Dyer
  • Andrew R. Jones
  • First Published December 12, 2025
Research

Oryza" > Continuous infiltration and evolutionary trajectory of nuclear organelle DNA in Oryza

  • Chenbo Gong
  • Yicheng Huang
  • Mengmeng Liu
  • Yong Zhou
  • Yinwei Xu
  • Nahed Mohammed Xintong Qiao Andrea Zuccolo Weibo Xie
  • ... [+4 authors] ...,
  • Rod A. Wing
  • Jianwei Zhang
  • Fei Zhou
  • Yongjun Lin
  • First Published April 25, 2025
Resource

Structural variants in 3000 rice genomes

  • Roven Rommel Fuentes
  • Dmytro Chebotarov
  • Jorge Duitama
  • Sean Smith
  • Juan Fernando De la Hoz
  • Marghoob Mohiyuddin Rod A. Wing Kenneth L. McNally
  • ... [+3 authors] ...,
  • Tatiana Tatarinova
  • Andrey Grigoriev
  • Ramil Mauleon
  • Nickolai Alexandrov
  • First Published April 16, 2019
Research

XIST locus" > Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

  • Julie E. Horvath
  • Christina B. Sheedy
  • Stephanie L. Merrett
  • Abdoulaye Banire Diallo
  • David L. Swofford
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Huntington F. Willard
  • First Published April 25, 2011
Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010
Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009
LETTER

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008
LETTER

Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana" > Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

  • Takeshi Itoh
  • Tsuyoshi Tanaka
  • Roberto A. Barrero
  • Chisato Yamasaki
  • Yasuyuki Fujii
  • Phillip B. Hilton Baltazar A. Antonio Hideo Aono Rolf Apweiler Richard Bruskiewich Thomas Bureau Frances Burr Antonio Costa de Oliveira Galina Fuks Takuya Habara Georg Haberer Bin Han Erimi Harada Aiko T. Hiraki Hirohiko Hirochika Douglas Hoen Hiroki Hokari Satomi Hosokawa Yue Hsing Hiroshi Ikawa Kazuho Ikeo Tadashi Imanishi Yukiyo Ito Pankaj Jaiswal Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Hiroaki Kawashima Jitendra P. Khurana Shoshi Kikuchi Setsuko Komatsu Kanako O. Koyanagi Hiromi Kubooka Damien Lieberherr Yao-Cheng Lin David Lonsdale Takashi Matsumoto Akihiro Matsuya W. Richard McCombie Joachim Messing Akio Miyao Nicola Mulder Yoshiaki Nagamura Jongmin Nam Nobukazu Namiki Hisataka Numa Shin Nurimoto Claire O’Donovan Hajime Ohyanagi Toshihisa Okido Satoshi OOta Naoki Osato Lance E. Palmer Francis Quetier Saurabh Raghuvanshi Naomi Saichi Hiroaki Sakai Yasumichi Sakai Katsumi Sakata Tetsuya Sakurai Fumihiko Sato Yoshiharu Sato Heiko Schoof Motoaki Seki Michie Shibata Yuji Shimizu Kazuo Shinozaki Yuji Shinso Nagendra K. Singh Brian Smith-White Jun-ichi Takeda Motohiko Tanino Tatiana Tatusova Supat Thongjuea Fusano Todokoro Mika Tsugane Akhilesh K. Tyagi Apichart Vanavichit Aihui Wang Rod A. Wing Kaori Yamaguchi Mayu Yamamoto Naoyuki Yamamoto Yeisoo Yu Hao Zhang Qiang Zhao
  • ... [+86 authors] ...,
  • Kenichi Higo
  • Benjamin Burr
  • Takashi Gojobori
  • Takuji Sasaki
  • First Published January 8, 2007
LETTER

Oryza australiensis, a wild relative of rice" > Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

  • Benoit Piegu
  • Romain Guyot
  • Nathalie Picault
  • Anne Roulin
  • Abhijit Saniyal
  • Hyeran Kim Kristi Collura
  • ... [+2 authors] ...,
  • Darshan S. Brar
  • Scott Jackson
  • Rod A. Wing
  • Olivier Panaud
  • First Published September 8, 2006
LETTER

Gossypium " > Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

  • Jennifer S. Hawkins
  • HyeRan Kim
  • John D. Nason
  • Rod A. Wing
  • Jonathan F. Wendel
  • First Published September 5, 2006
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