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Research

Alu insertion variants alter gene transcript levels" > Alu insertion variants alter gene transcript levels

Lindsay M. Payer
Jared P. Steranka
Maria S. Kryatova
Giacomo Grillo
Mathieu Lupien
Pedro P. Rocha
Kathleen H. Burns

First Published November 19, 2021

Method

cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks" > Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

Seyed Ali Madani Tonekaboni
Parisa Mazrooei
Victor Kofia
Benjamin Haibe-Kains
Mathieu Lupien

First Published September 18, 2019

Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Michael J. Johnston
Ana Nikolic
Nicoletta Ninkovic
Paul Guilhamon
Florence M.G. Cavalli
Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
... [+16 authors] ...,
Bradley St Croix
Douglas J. Mahoney
Mathieu Lupien
Marco Gallo

First Published June 27, 2019

Research

cis-regulatory modules controlling liver functions" > The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Julie Dubois-Chevalier
Vanessa Dubois
Hélène Dehondt
Parisa Mazrooei
Claire Mazuy
Aurélien A. Sérandour Céline Gheeraert Penderia Guillaume Eric Baugé Bruno Derudas Nathalie Hennuyer Réjane Paumelle Guillemette Marot Jason S. Carroll
... [+9 authors] ...,
Mathieu Lupien
Bart Staels
Philippe Lefebvre
Jérôme Eeckhoute

First Published April 11, 2017

Research

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

Olivia Corradin
Alina Saiakhova
Batool Akhtar-Zaidi
Lois Myeroff
Joseph Willis
Richard Cowper-Sal·lari
Mathieu Lupien
Sanford Markowitz
Peter C. Scacheri

First Published November 6, 2013

Research

SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus" > Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

Xiaoyang Zhang
Richard Cowper-Sal·lari
Swneke D. Bailey
Jason H. Moore
Mathieu Lupien

First Published June 4, 2012

Research

XIST locus" > Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

Julie E. Horvath
Christina B. Sheedy
Stephanie L. Merrett
Abdoulaye Banire Diallo
David L. Swofford
NISC Comparative Sequencing Program
Eric D. Green
Huntington F. Willard

First Published April 25, 2011

Research

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers

Aurélien A. Sérandour
Stéphane Avner
Frédéric Percevault
Florence Demay
Maud Bizot
Céline Lucchetti-Miganeh Frédérique Barloy-Hubler Myles Brown
... [+3 authors] ...,
Mathieu Lupien
Raphaël Métivier
Gilles Salbert
Jérôme Eeckhoute

First Published January 13, 2011

Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

Lukas Chavez
Justyna Jozefczuk
Christina Grimm
Jörn Dietrich
Bernd Timmermann
Hans Lehrach
Ralf Herwig
James Adjaye

First Published August 27, 2010

Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

Andrew L. Hufton
Susanne Mathia
Helene Braun
Udo Georgi
Hans Lehrach
Martin Vingron
Albert J. Poustka
Georgia Panopoulou

First Published August 24, 2009

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