Research
Epigenetic characterization of pseudogenes across human tissues
- First Published April 15, 2026
Research
Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Research
Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
- First Published September 11, 2013
Research
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Resource
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- First Published February 7, 2011
Research
C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
- First Published December 22, 2010
Method
Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
- First Published August 27, 2010
Letter
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
- First Published August 24, 2009
Methods
MSB: A mean-shift-based approach for the analysis of structural variation in the genome
- First Published November 26, 2008
LETTER
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
- First Published July 14, 2008
LETTER
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
- First Published May 16, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
LETTER
Assessing the limits of genomic data integration for predicting protein networks
- First Published July 5, 2005
LETTER
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
- First Published May 2, 2005
LETTER
Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome
- First Published July 1, 2004
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
RESOURCE
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
- First Published April 1, 2004
LETTER
The Genomic Sequence and Comparative Analysis of the Rat Major Histocompatibility Complex
- First Published April 1, 2004
RESOURCE
Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters
- First Published December 1, 2003
Methods
Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes
- First Published December 1, 2003
LETTER
Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
- First Published December 1, 2003
ARTICLE
New Evidence for Genome-Wide Duplications at the Origin of Vertebrates Using an Amphioxus Gene Set and Completed Animal Genomes
- First Published June 1, 2003
METHODS
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
- First Published April 1, 2003
LETTER
Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons
- First Published November 1, 2002
ARTICLE
Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
- First Published October 1, 2002
LETTER
Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
- First Published February 1, 2002
LETTER
Relating Whole-Genome Expression Data with Protein-Protein Interactions
- First Published January 1, 2002
LETTER
Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins
- First Published October 1, 2001
METHODS
A Human cDNA Expression Library in Yeast Enriched for Open Reading Frames
- First Published September 20, 2001
INSIGHT/OUTLOOK
Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function
- First Published September 1, 2001
RESOURCE
An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library
- First Published August 16, 2001
LETTER
Whole-genome Trees Based on the Occurrence of Folds and Orthologs: Implications for Comparing Genomes on Different Levels
- First Published June 1, 2000
RESOURCE
Panel of Microsatellite Markers for Whole-Genome Scans and Radiation Hybrid Mapping and a Mouse Family Tree
- First Published September 1, 1999
LETTER
A Contiguous 3-Mb Sequence-Ready Map in the S3–MX Region on 21q22.2 Based on High- Throughput Nonisotopic Library Screenings
- First Published April 1, 1999
RESEARCH
Estimation of Distances and Map Construction Using Radiation Hybrids
- First Published May 1, 1998
LETTER
Bacterial Contig Map of the 21q11 Region Associated with Alzheimer’s Disease and Abnormal Myelopoiesis in Down Syndrome
- First Published April 1, 1998