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Research

SHANK2 as a tumor suppressor in neuroblastoma" > Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma

  • Gonzalo Lopez
  • Karina L. Conkrite
  • Miriam Doepner
  • Komal S. Rathi
  • Apexa Modi
  • Zalman Vaksman Lance M. Farra Eric Hyson Moataz Noureddine Jun S. Wei Malcolm A. Smith Shahab Asgharzadeh Robert C. Seeger Javed Khan
  • ... [+9 authors] ...,
  • Jaime Guidry Auvil
  • Daniela S. Gerhard
  • John M. Maris
  • Sharon J. Diskin
  • First Published August 13, 2020
Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010
Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009
Erratum

Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy

  • Edward F. Attiyeh
  • Sharon J. Diskin
  • Marc A. Attiyeh
  • Yaël P. Mossé
  • Cuiping Hou
  • Eric M. Jackson Cecilia Kim
  • ... [+2 authors] ...,
  • Joseph Glessner
  • Hakon Hakonarson
  • Jaclyn A. Biegel
  • John M. Maris
  • First Published March 2, 2009
Methods

Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy

  • Edward F. Attiyeh
  • Sharon J. Diskin
  • Marc A. Attiyeh
  • Yaël P. Mossé
  • Cuiping Hou
  • Eric M. Jackson Cecilia Kim
  • ... [+2 authors] ...,
  • Joseph Glessner
  • Hakon Hakonarson
  • Jaclyn A. Biegel
  • John M. Maris
  • First Published January 13, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
Methods

Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification

  • Bo Wen
  • Hao Wu
  • Hans Bjornsson
  • Roland D. Green
  • Rafael Irizarry
  • Andrew P. Feinberg
  • First Published September 16, 2008
LETTER

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008
Methods

SNP-specific array-based allele-specific expression analysis

  • Hans T. Bjornsson
  • Thomas J. Albert
  • Christine M. Ladd-Acosta
  • Roland D. Green
  • Michael A. Rongione
  • Christina M. Middle
  • Rafael A. Irizarry
  • Karl W. Broman
  • Andrew P. Feinberg
  • First Published March 27, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
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