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Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding

Liangxi Wang
Tiegh Taylor
Kumaragurubaran Rathnakumar
Nadiya Khyzha
Minggao Liang
Azad Alizada Laura F. Campitelli Sara E. Pour Zain M. Patel Lina Antounians Ian C. Tobias Huayun Hou Timothy R. Hughes
... [+8 authors] ...,
Sushmita Roy
Jennifer A. Mitchell
Jason E. Fish
Michael D. Wilson

First Published June 6, 2025

A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells

Gurdeep Singh
Shanelle Mullany
Sakthi D. Moorthy
Richard Zhang
Tahmid Mehdi
Ruxiao Tian
Andrew G. Duncan
Alan M. Moses
Jennifer A. Mitchell

First Published March 12, 2021

Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes

Sakthi D. Moorthy
Scott Davidson
Virlana M. Shchuka
Gurdeep Singh
Nakisa Malek-Gilani
Lida Langroudi
... [+1 authors] ...,
Alexandre Martchenko
Vincent So
Neil N. Macpherson
Jennifer A. Mitchell

First Published November 28, 2016

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

Stefan Schoenfelder
Mayra Furlan-Magaril
Borbala Mifsud
Filipe Tavares-Cadete
Robert Sugar
Biola-Maria Javierre Takashi Nagano Yulia Katsman Moorthy Sakthidevi Steven W. Wingett Emilia Dimitrova Andrew Dimond Lucas B. Edelman Sarah Elderkin Kristina Tabbada Elodie Darbo Simon Andrews Bram Herman Andy Higgs Emily LeProust
... [+15 authors] ...,
Cameron S. Osborne
Jennifer A. Mitchell
Nicholas M. Luscombe
Peter Fraser

First Published March 9, 2015

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

Lukas Chavez
Justyna Jozefczuk
Christina Grimm
Jörn Dietrich
Bernd Timmermann
Hans Lehrach
Ralf Herwig
James Adjaye

First Published August 27, 2010

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

Andrew L. Hufton
Susanne Mathia
Helene Braun
Udo Georgi
Hans Lehrach
Martin Vingron
Albert J. Poustka
Georgia Panopoulou

First Published August 24, 2009

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

Andrew L. Hufton
Detlef Groth
Martin Vingron
Hans Lehrach
Albert J. Poustka
Georgia Panopoulou

First Published July 14, 2008

Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications" > Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

Pierre Hilson
Joke Allemeersch
Thomas Altmann
Sébastien Aubourg
Alexandra Avon
Jim Beynon Rishikesh P. Bhalerao Frédérique Bitton Michel Caboche Bernard Cannoot Vasil Chardakov Cécile Cognet-Holliger Vincent Colot Mark Crowe Caroline Darimont Steffen Durinck Holger Eickhoff Andéol Falcon de Longevialle Edward E. Farmer Murray Grant Martin T.R. Kuiper Hans Lehrach Céline Léon Antonio Leyva Joakim Lundeberg Claire Lurin Yves Moreau Wilfried Nietfeld Javier Paz-Ares Philippe Reymond Pierre Rouzé Goran Sandberg Maria Dolores Segura Carine Serizet Alexandra Tabrett Ludivine Taconnat Vincent Thareau Paul Van Hummelen Steven Vercruysse Marnik Vuylsteke Magdalena Weingartner Peter J. Weisbeek
... [+37 authors] ...,
Valtteri Wirta
Floyd R.A. Wittink
Marc Zabeau
Ian Small

First Published October 15, 2004

Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome

Pascal Kahlem
Marc Sultan
Ralf Herwig
Matthias Steinfath
Daniela Balzereit
Barbara Eppens Nidhi G. Saran Mathew T. Pletcher Sarah T. South
... [+4 authors] ...,
Gail Stetten
Hans Lehrach
Roger H. Reeves
Marie-Laure Yaspo

First Published July 1, 2004

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

Martin Krzywinski
John Wallis
Claudia Gösele
Ian Bosdet
Readman Chiu
Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
... [+47 authors] ...,
Norbert Hübner
Steven Jones
Marco Marra
Jacqueline Schein

First Published April 1, 2004

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