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Resource

Benchmarking small-variant genotyping in polyploids

  • Daniel P. Cooke
  • David C. Wedge
  • Gerton Lunter
  • First Published December 29, 2021
Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • Stephen B. Montgomery
  • David L. Goode
  • Erika Kvikstad
  • Cornelis A. Albers
  • Zhengdong D. Zhang
  • Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
  • ... [+12 authors] ...,
  • Kateryna D. Makova
  • Jonathan Marchini
  • Gil McVean
  • Gerton Lunter
  • First Published March 11, 2013
Resource

Dindel: Accurate indel calls from short-read data

  • Cornelis A. Albers
  • Gerton Lunter
  • Daniel G. MacArthur
  • Gilean McVean
  • Willem H. Ouwehand
  • Richard Durbin
  • First Published October 27, 2010
Resource

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

  • Gerton Lunter
  • Martin Goodson
  • First Published October 27, 2010
Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010
Research

Massive turnover of functional sequence in human and other mammalian genomes

  • Stephen Meader
  • Chris P. Ponting
  • Gerton Lunter
  • First Published August 6, 2010
Method

Genome assembly quality: Assessment and improvement using the neutral indel model

  • Stephen Meader
  • LaDeana W. Hillier
  • Devin Locke
  • Chris P. Ponting
  • Gerton Lunter
  • First Published March 19, 2010
Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009
LETTER

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008
Methods

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

  • Gerton Lunter
  • Andrea Rocco
  • Naila Mimouni
  • Andreas Heger
  • Alexandre Caldeira
  • Jotun Hein
  • First Published December 11, 2007
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