Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Research
Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution
- First Published July 13, 2023
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
- First Published September 25, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Research
High-throughput allele-specific expression across 250 environmental conditions
- First Published October 19, 2016
Research
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
- First Published September 21, 2015
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
