Method
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
- First Published July 11, 2023
Research
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
- First Published June 29, 2021
Research
Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
- First Published November 18, 2020
Research
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
- First Published November 6, 2018
Research
The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
- First Published October 17, 2016
Corrigendum
Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published October 3, 2016
Research
Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young
- First Published July 19, 2016
Insight/Outlook
The ethics of conducting molecular autopsies in cases of sudden death in the young
- First Published July 13, 2016
Research
Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
- First Published September 16, 2014
Resource
Comparative validation of the D. melanogaster modENCODE transcriptome annotation
- First Published July 1, 2014
Resource
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
- First Published April 8, 2014
Method
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data
- First Published January 7, 2013
Resource
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
- First Published June 18, 2012
Research
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published March 28, 2012
Research
A matter of life or death: How microsatellites emerge in and vanish from the human genome
- First Published October 12, 2011
Research
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Resource
A SNP discovery method to assess variant allele probability from next-generation resequencing data
- First Published December 17, 2009
Article
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
- First Published November 3, 2009
Resource
Windshield splatter analysis with the Galaxy metagenomic pipeline
- First Published October 9, 2009
Letter
Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions
- First Published June 5, 2009
LETTER
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
- First Published December 3, 2008
LETTER
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
- First Published September 25, 2008
LETTER
The genome-wide determinants of human and chimpanzee microsatellite evolution
- First Published November 21, 2007
RESOURCE
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
LETTER
Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data
- First Published June 13, 2007
COMMENTARY
Community annotation: Procedures, protocols, and supporting tools
- First Published October 25, 2006
LETTER
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
- First Published October 25, 2006
Methods
ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
- First Published October 19, 2006
LETTER
Experimental validation of predicted mammalian erythroid cis-regulatory modules
- First Published October 12, 2006
LETTER
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
- First Published July 15, 2005
ARTICLE
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Methods
Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
- First Published February 1, 2005
Article
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
- First Published January 3, 2005
Methods
Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat
- First Published April 1, 2004
LETTER
Genomic Analysis of the Nuclear Receptor Family: New Insights Into Structure, Regulation, and Evolution From the Rat Genome
- First Published April 1, 2004
Methods
Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project
- First Published April 1, 2004
Methods
Identification of Rat Genes by TWINSCAN Gene Prediction, RT–PCR, and Direct Sequencing
- First Published April 1, 2004
LETTER
Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents
- First Published April 1, 2004
ARTICLE
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
ARTICLE
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
LETTER
Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
- First Published January 1, 2003