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Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Research

Widespread plasticity in CTCF occupancy linked to DNA methylation

Hao Wang
Matthew T. Maurano
Hongzhu Qu
Katherine E. Varley
Jason Gertz
Florencia Pauli Kristen Lee Theresa Canfield Molly Weaver Richard Sandstrom
... [+5 authors] ...,
Robert E. Thurman
Rajinder Kaul
Richard M. Myers
John A. Stamatoyannopoulos

First Published September 5, 2012

Research

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

Timothy E. Reddy
Jason Gertz
Florencia Pauli
Katerina S. Kucera
Katherine E. Varley
Kimberly M. Newberry Georgi K. Marinov Ali Mortazavi Brian A. Williams Lingyun Song
... [+5 authors] ...,
Gregory E. Crawford
Barbara Wold
Huntington F. Willard
Richard M. Myers

First Published February 2, 2012

Article

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

Timothy E. Reddy
Florencia Pauli
Rebekka O. Sprouse
Norma F. Neff
Kimberly M. Newberry
Michael J. Garabedian
Richard M. Myers

First Published October 2, 2009