Research
Epigenetic and evolutionary features of ape subterminal heterochromatin
- First Published October 22, 2025
Resource
An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
- First Published December 5, 2024
Resource
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
- First Published October 2, 2024
Research
AGAP duplicons associate with structural diversity at Chromosome 10q11.22" > AGAP duplicons associate with structural diversity at Chromosome 10q11.22
- First Published September 25, 2024
Research
TBC1D3 gene family in humans" > Independent expansion, selection, and hypervariability of the TBC1D3 gene family in humans
- First Published August 6, 2024
Method
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
- First Published April 16, 2024
Research
Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall
- First Published December 7, 2023
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Method
Analyzing rare mutations in metagenomes assembled using long and accurate reads
- First Published November 23, 2022
Method
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
- First Published November 15, 2022
Method
Variations in antibody repertoires correlate with vaccine responses
- First Published March 31, 2022
Research
Differences in the number of de novo mutations between individuals are due to small family-specific effects and stochasticity
- First Published July 23, 2021
Research
Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats
- First Published July 9, 2021
Resource
Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
- First Published October 22, 2020
Research
V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
- First Published September 18, 2020
Method
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
- First Published August 14, 2020
Method
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
- First Published June 3, 2019
Method
Plasmid detection and assembly in genomic and metagenomic data sets
- First Published May 2, 2019
Method
Transcriptional fates of human-specific segmental duplications in brain
- First Published September 18, 2018
Method
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Method
Detection and analysis of ancient segmental duplications in mammalian genomes
- First Published May 7, 2018
Corrigendum
Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data
- First Published January 2, 2018
Corrigendum
Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
- First Published September 1, 2017
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Research
Discovery and genotyping of structural variation from long-read haploid genome sequence data
- First Published November 28, 2016
Research
Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
- First Published October 7, 2016
Corrigendum
Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals
- First Published August 3, 2015
Research
Characteristics of de novo structural changes in the human genome
- First Published April 16, 2015
Method
MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals
- First Published February 6, 2015
Method
The discovery of integrated gene networks for autism and related disorders
- First Published November 5, 2014
Resource
Single haplotype assembly of the human genome from a hydatidiform mole
- First Published November 4, 2014
Resource
Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
- First Published March 27, 2014
Method
Reconstructing complex regions of genomes using long-read sequencing technology
- First Published January 13, 2014
Research
Hominoid fission of chromosome 14/15 and the role of segmental duplications
- First Published September 27, 2013
Research
Evolution and diversity of copy number variation in the great ape lineage
- First Published July 3, 2013
Method
Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
- First Published April 5, 2013
Research
LRRC37 gene family" > Evolutionary dynamism of the primate LRRC37 gene family
- First Published October 11, 2012
Method
Copy number variation detection and genotyping from exome sequence data
- First Published May 14, 2012
Research
The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
- First Published March 14, 2012
Resource
Copy number variation of individual cattle genomes using next-generation sequencing
- First Published February 2, 2012
Resource
Simultaneous structural variation discovery among multiple paired-end sequenced genomes
- First Published November 2, 2011
Research
Copy number variation analysis in the great apes reveals species-specific patterns of structural variation
- First Published August 8, 2011
Research
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee
- First Published June 17, 2011