Research
3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
- First Published October 30, 2025
Research
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
- First Published May 18, 2021
Research
Long-read sequencing for non-small-cell lung cancer genomes
- First Published September 4, 2020
Method
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates
- First Published August 25, 2020
Corrigendum
Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 1, 2018
Research
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- First Published May 18, 2017
Research
A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
- First Published December 9, 2016
Resource
Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
- First Published December 14, 2015
Research
Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 4, 2014
Resource
Coelacanth genomes reveal signatures for evolutionary transition from water to land
- First Published July 22, 2013
Research
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
- First Published February 14, 2013
Research
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
- First Published June 11, 2012
Method
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
- First Published February 27, 2012
Resource
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
- First Published March 3, 2011
Research
Nucleotide composition-linked divergence of vertebrate core promoter architecture
- First Published January 10, 2011
Letter
Complex selection on 5′ splice sites in intron-rich organisms
- First Published September 10, 2009
LETTER
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
- First Published June 13, 2007
LETTER
Three distinct modes of intron dynamics in the evolution of eukaryotes
- First Published May 10, 2007
LETTER
Evolutionarily conserved genes preferentially accumulate introns
- First Published May 10, 2007
LETTER
Origins and impact of constraints in evolution of gene families
- First Published October 19, 2006
LETTER
Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
- First Published August 10, 2006
LETTER
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- First Published December 12, 2005
LETTER
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- First Published October 15, 2004
LETTER
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
- First Published September 1, 2004
LETTER
Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
- First Published January 5, 2004
LETTER
Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution
- First Published October 2, 2003
RESOURCE
Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
- First Published January 1, 2003
LETTER
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
- First Published July 1, 2002
LETTER
Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria
- First Published May 16, 2002
REPORT
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
- First Published April 11, 2001
LETTER
Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes
- First Published March 13, 2001
ARTICLE
Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context
- First Published February 8, 2001
LETTER
Prediction of the Archaeal Exosome and Its Connections with the Proteasome and the Translation and Transcription Machineries by a Comparative-Genomic Approach
- First Published February 1, 2001
LETTER
Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System
- First Published August 1, 2000
LETTER
From Complete Genomes to Measures of Substitution Rate Variability Within and Between Proteins
- First Published July 1, 2000
ARTICLE
The Bacterial Replicative Helicase DnaB Evolved from a RecA Duplication
- First Published January 1, 2000
RESEARCH
Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
- First Published July 1, 1999
ARTICLE
Distribution of Protein Folds in the Three Superkingdoms of Life
- First Published January 1, 1999
RESEARCH
Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the “Eukaryotic” Protein Kinase Superfamily
- First Published October 1, 1998
RESEARCH
Analogous Enzymes: Independent Inventions in Enzyme Evolution
- First Published August 1, 1998