Method
Analyzing rare mutations in metagenomes assembled using long and accurate reads
- First Published November 23, 2022
Method
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
- First Published November 15, 2022
Method
Variations in antibody repertoires correlate with vaccine responses
- First Published March 31, 2022
Research
V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
- First Published September 18, 2020
Method
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
- First Published June 3, 2019
Method
Plasmid detection and assembly in genomic and metagenomic data sets
- First Published May 2, 2019
Method
Detection and analysis of ancient segmental duplications in mammalian genomes
- First Published May 7, 2018
Method
Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
- First Published April 5, 2013
Letter
Complex selection on 5′ splice sites in intron-rich organisms
- First Published September 10, 2009
RESOURCE
De novo fragment assembly with short mate-paired reads: Does the read length matter?
- First Published December 3, 2008
Methods
Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
- First Published April 21, 2008
Methods
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
- First Published August 9, 2007
LETTER
Three distinct modes of intron dynamics in the evolution of eukaryotes
- First Published May 10, 2007
LETTER
Evolutionarily conserved genes preferentially accumulate introns
- First Published May 10, 2007
LETTER
Origins and impact of constraints in evolution of gene families
- First Published October 19, 2006
Forum
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
- First Published March 1, 2006
Chicken Special/Letters
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
- First Published December 8, 2004
LETTER
Alu repeat elements reveals complex evolutionary history" > Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
- First Published November 1, 2004
ARTICLE
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
- First Published April 1, 2004
LETTER
Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
- First Published January 5, 2004
LETTER
Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution
- First Published October 2, 2003
LETTER
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
- First Published July 1, 2002
LETTER
Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria
- First Published May 16, 2002
LETTER
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
- First Published January 1, 2002
LETTER
Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes
- First Published March 13, 2001
ARTICLE
Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context
- First Published February 8, 2001
METHODS
Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry
- First Published February 1, 2001
LETTER
Prediction of the Archaeal Exosome and Its Connections with the Proteasome and the Translation and Transcription Machineries by a Comparative-Genomic Approach
- First Published February 1, 2001
LETTER
Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System
- First Published August 1, 2000
LETTER
From Complete Genomes to Measures of Substitution Rate Variability Within and Between Proteins
- First Published July 1, 2000
ARTICLE
The Bacterial Replicative Helicase DnaB Evolved from a RecA Duplication
- First Published January 1, 2000
RESEARCH
Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
- First Published July 1, 1999
ARTICLE
Distribution of Protein Folds in the Three Superkingdoms of Life
- First Published January 1, 1999
RESEARCH
Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the “Eukaryotic” Protein Kinase Superfamily
- First Published October 1, 1998
RESEARCH
Analogous Enzymes: Independent Inventions in Enzyme Evolution
- First Published August 1, 1998