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Method

cis-regulation with a compendium of genome-wide histone H3K27ac profiles" > Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles

  • Su Wang
  • Chongzhi Zang
  • Tengfei Xiao
  • Jingyu Fan
  • Shenglin Mei
  • Qian Qin Qiu Wu Xujuan Li Kexin Xu
  • ... [+4 authors] ...,
  • Housheng Hansen He
  • Myles Brown
  • Clifford A. Meyer
  • X. Shirley Liu
  • First Published July 27, 2016
Research

Sequence determinants of improved CRISPR sgRNA design

  • Han Xu
  • Tengfei Xiao
  • Chen-Hao Chen
  • Wei Li
  • Clifford A. Meyer
  • Qiu Wu Di Wu Le Cong
  • ... [+3 authors] ...,
  • Feng Zhang
  • Jun S. Liu
  • Myles Brown
  • X. Shirley Liu
  • First Published June 10, 2015
Research

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

  • Housheng Hansen He
  • Clifford A. Meyer
  • Mei Wei Chen
  • V. Craig Jordan
  • Myles Brown
  • X. Shirley Liu
  • First Published April 16, 2012
Research

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers

  • Aurélien A. Sérandour
  • Stéphane Avner
  • Frédéric Percevault
  • Florence Demay
  • Maud Bizot
  • Céline Lucchetti-Miganeh Frédérique Barloy-Hubler Myles Brown
  • ... [+3 authors] ...,
  • Mathieu Lupien
  • Raphaël Métivier
  • Gilles Salbert
  • Jérôme Eeckhoute
  • First Published January 13, 2011
Letter

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009
Letter

Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery

  • Joanna Boros
  • Ian J. Donaldson
  • Amanda O'Donnell
  • Zaneta A. Odrowaz
  • Leo Zeef
  • Mathieu Lupien
  • ... [+1 authors] ...,
  • Clifford A. Meyer
  • X. Shirley Liu
  • Myles Brown
  • Andrew D. Sharrocks
  • First Published August 17, 2009
Letter

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers

  • Jérôme Eeckhoute
  • Mathieu Lupien
  • Clifford A. Meyer
  • Michael P. Verzi
  • Ramesh A. Shivdasani
  • X. Shirley Liu
  • Myles Brown
  • First Published January 7, 2009
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008
LETTER

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007
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