Resource
An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
- First Published December 5, 2024
Method
Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases
- First Published December 14, 2023
Research
Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition
- First Published April 5, 2017
Research
Pangolin genomes and the evolution of mammalian scales and immunity
- First Published August 10, 2016
Research
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
- First Published March 15, 2012
Method
C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- First Published December 22, 2010
Research
Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing
- First Published October 29, 2010
Method
Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families
- First Published April 29, 2010
Letter
Complex selection on 5′ splice sites in intron-rich organisms
- First Published September 10, 2009
ARTICLE
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
- First Published June 13, 2007
LETTER
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
- First Published June 13, 2007
PERSPECTIVE
What is a gene, post-ENCODE? History and updated definition
- First Published June 13, 2007
LETTER
Three distinct modes of intron dynamics in the evolution of eukaryotes
- First Published May 10, 2007
LETTER
Evolutionarily conserved genes preferentially accumulate introns
- First Published May 10, 2007
Methods
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
- First Published November 21, 2006
LETTER
Origins and impact of constraints in evolution of gene families
- First Published October 19, 2006
RESOURCE
Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon
- First Published October 1, 2004
LETTER
Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
- First Published January 5, 2004
LETTER
Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution
- First Published October 2, 2003
LETTER
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
- First Published July 1, 2002
LETTER
Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria
- First Published May 16, 2002
LETTER
Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes
- First Published March 13, 2001
ARTICLE
Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context
- First Published February 8, 2001
LETTER
Prediction of the Archaeal Exosome and Its Connections with the Proteasome and the Translation and Transcription Machineries by a Comparative-Genomic Approach
- First Published February 1, 2001
LETTER
Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System
- First Published August 1, 2000
LETTER
From Complete Genomes to Measures of Substitution Rate Variability Within and Between Proteins
- First Published July 1, 2000
ARTICLE
The Bacterial Replicative Helicase DnaB Evolved from a RecA Duplication
- First Published January 1, 2000
RESEARCH
Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
- First Published July 1, 1999
ARTICLE
Distribution of Protein Folds in the Three Superkingdoms of Life
- First Published January 1, 1999
RESEARCH
Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the “Eukaryotic” Protein Kinase Superfamily
- First Published October 1, 1998
RESEARCH
Analogous Enzymes: Independent Inventions in Enzyme Evolution
- First Published August 1, 1998