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In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Method

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data

  • Jean Fan
  • Hae-Ock Lee
  • Soohyun Lee
  • Da-eun Ryu
  • Semin Lee
  • Catherine Xue Seok Jin Kim Kihyun Kim
  • ... [+3 authors] ...,
  • Nikolaos Barkas
  • Peter J. Park
  • Woong-Yang Park
  • Peter V. Kharchenko
  • First Published June 13, 2018
Research

Integrated single-cell genetic and transcriptional analysis suggests novel drivers of chronic lymphocytic leukemia

  • Lili Wang
  • Jean Fan
  • Joshua M. Francis
  • George Georghiou
  • Sarah Hergert
  • Shuqiang Li Rutendo Gambe Chensheng W. Zhou Chunxiao Yang Sheng Xiao Paola Dal Cin Michaela Bowden Dylan Kotliar Sachet A. Shukla Jennifer R. Brown Donna Neuberg Dario R. Alessi
  • ... [+12 authors] ...,
  • Cheng-Zhong Zhang
  • Peter V. Kharchenko
  • Kenneth J. Livak
  • Catherine J. Wu
  • First Published July 5, 2017
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Research

Drosophila genome" > Nature and function of insulator protein binding sites in the Drosophila genome

  • Yuri B. Schwartz
  • Daniela Linder-Basso
  • Peter V. Kharchenko
  • Michael Y. Tolstorukov
  • Maria Kim
  • Hua-Bing Li Andrey A. Gorchakov Aki Minoda Gregory Shanower Artyom A. Alekseyenko Nicole C. Riddle Youngsook L. Jung Tingting Gu Annette Plachetka Sarah C.R. Elgin Mitzi I. Kuroda
  • ... [+11 authors] ...,
  • Peter J. Park
  • Mikhail Savitsky
  • Gary H. Karpen
  • Vincenzo Pirrotta
  • First Published July 5, 2012
Research

XIST locus" > Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

  • Julie E. Horvath
  • Christina B. Sheedy
  • Stephanie L. Merrett
  • Abdoulaye Banire Diallo
  • David L. Swofford
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Huntington F. Willard
  • First Published April 25, 2011
Research

Drosophila heterochromatin" > Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

  • Nicole C. Riddle
  • Aki Minoda
  • Peter V. Kharchenko
  • Artyom A. Alekseyenko
  • Yuri B. Schwartz
  • Michael Y. Tolstorukov Andrey A. Gorchakov Jacob D. Jaffe Cameron Kennedy Daniela Linder-Basso Sally E. Peach Gregory Shanower Haiyan Zheng Mitzi I. Kuroda
  • ... [+9 authors] ...,
  • Vincenzo Pirrotta
  • Peter J. Park
  • Sarah C.R. Elgin
  • Gary H. Karpen
  • First Published December 22, 2010
Research

Drosophila replication program" > Chromatin signatures of the Drosophila replication program

  • Matthew L. Eaton
  • Joseph A. Prinz
  • Heather K. MacAlpine
  • George Tretyakov
  • Peter V. Kharchenko
  • David M. MacAlpine
  • First Published December 22, 2010
Method

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing

  • Jamie K. Teer
  • Lori L. Bonnycastle
  • Peter S. Chines
  • Nancy F. Hansen
  • Natsuyo Aoyama
  • Amy J. Swift Hatice Ozel Abaan Thomas J. Albert Elliott H. Margulies
  • ... [+4 authors] ...,
  • Eric D. Green
  • Francis S. Collins
  • James C. Mullikin
  • Leslie G. Biesecker
  • First Published September 1, 2010
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