Corrigendum
Corrigendum: Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published July 7, 2026
Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Resource
Charting the regulatory landscape of TP53 on transposable elements in cancer
- First Published May 13, 2025
Method
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
Resource
Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
- First Published February 21, 2025
Resource
Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution
- First Published January 14, 2025
Method
Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome
- First Published December 8, 2023
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Resource
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
- First Published May 8, 2023
Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Resource
cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish" > Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
- First Published June 1, 2022
Method
Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data
- First Published December 21, 2020
Method
Epigenomic differences in the human and chimpanzee genomes are associated with structural variation
- First Published December 10, 2020
Research
Sequence determinants of polyadenylation-mediated regulation
- First Published September 17, 2019
Method
Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
- First Published January 22, 2019
Corrigendum
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published March 1, 2017
Research
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Corrigendum
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Research
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Method
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Research
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Method
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Research
Recurrent epimutations activate gene body promoters in primary glioblastoma
- First Published April 7, 2014
Resource
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Method
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
- First Published June 26, 2013
Method
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
- First Published June 26, 2013
Research
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Method
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
- First Published October 2, 2012
Research
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Research
C. elegans" > High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Research
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Methods
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
Methods
cis-regulatory motifs in human core promoters" > Systematic functional characterization of cis-regulatory motifs in human core promoters
- First Published February 6, 2008