Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics
- First Published November 15, 2017
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
- First Published August 19, 2015
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
- First Published July 22, 2013
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Copy-number-aware differential analysis of quantitative DNA sequencing data
- First Published August 9, 2012
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
C. elegans" > High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
- First Published November 2, 2010
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
