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Method

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith
Chunyu Zhao
Veronika Dubinkina
Xiaofan Jin
Liron Zahavi
Saar Shoer
Jacqueline Moltzau-Anderson
Eran Segal
Katherine S. Pollard

First Published April 10, 2025

Resource

An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants

Can Yuan
Lijing Tang
Thomas Lopdell
Vyacheslav A. Petrov
Claire Oget-Ebrad
Gabriel Costa Monteiro Moreira José Luis Gualdrón Duarte Arnaud Sartelet Zhangrui Cheng Mazdak Salavati D. Claire Wathes Mark A. Crowe Wouter Coppieters Mathew Littlejohn Carole Charlier Tom Druet Michel Georges Haruko Takeda Mark Crowe Niamh McLoughlin Alan Fahey Elizabeth Matthews Andreia Santoro Colin Byrne Pauline Rudd Roisin O'Flaherty Sinead Hallinan Claire Wathes Zhangrui Cheng Ali Fouladi Geoff Pollott Dirk Werling Beatriz Sanz Bernardo Mazdak Salavati Laura Buggiotti Alistair Wylie Matt Bell Conrad Ferris Mieke Vaneetvelde Kristof Hermans Geert Opsomer Sander Moerman Jenne De Koster Hannes Bogaert Jan Vandepitte Leila Vandevelde Bonny Vanranst Johanna Hoglund Susanne Dahl Klaus Ingvartsen Martin Sørensen Leslie Foldager Soren Ostergaard Janne Rothmann Mogens Krogh Else Meyer Charlotte Gaillard Jehan Ettema Tine Rousing Federica Signorelli Francesco Napolitano Bianca Moioli Alessandra Crisa Luca Buttazzoni Jennifer McClure Daragh Matthews Francis Kearney Andrew Cromie Matt McClure Shujun Zhang Xing Chen Huanchun Chen Junlong Zhao Liguo Yang Guohua Hua Chen Tan Guiqiang Wang Michel Bonneau Andrea Pompozzi Armin Pearn Arnold Evertson Linda Kosten Anders Fogh Thomas Andersen Matthew Lucy Chris Elsik Gavin Conant Jerry Taylor Nicolas Gengler Michel Georges Frederic Colinet Marilou Ramos Pamplona Hedi Hammami Catherine Bastin Haruko Takeda Aurelie Laine
... [+91 authors] ...,
Lijing Tang
Martin Schulze
Cinzia Marchitelli
Sergio Palma-Vera

First Published September 26, 2023

Research

Sequence determinants of polyadenylation-mediated regulation

Ilya Vainberg Slutskin
Adina Weinberger
Eran Segal

First Published September 17, 2019

Research

Systematic interrogation of human promoters

Shira Weingarten-Gabbay
Ronit Nir
Shai Lubliner
Eilon Sharon
Yael Kalma
Adina Weinberger
Eran Segal

First Published January 8, 2019

Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published March 1, 2017

Research

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published December 13, 2016

Research

Noise in gene expression is coupled to growth rate

Leeat Keren
David van Dijk
Shira Weingarten-Gabbay
Dan Davidi
Ghil Jona
Adina Weinberger
Ron Milo
Eran Segal

First Published September 9, 2015

Corrigendum

Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site

Michal Levo
Einat Zalckvar
Eilon Sharon
Ana Carolina Dantas Machado
Yael Kalma
Maya Lotan-Pompan
... [+1 authors] ...,
Adina Weinberger
Zohar Yakhini
Remo Rohs
Eran Segal

First Published September 1, 2015

Research

Core promoter sequence in yeast is a major determinant of expression level

Shai Lubliner
Ifat Regev
Maya Lotan-Pompan
Sarit Edelheit
Adina Weinberger
Eran Segal

First Published May 12, 2015

Method

Unraveling determinants of transcription factor binding outside the core binding site

Michal Levo
Einat Zalckvar
Eilon Sharon
Ana Carolina Dantas Machado
Yael Kalma
Maya Lotam-Pompan
... [+1 authors] ...,
Adina Weinberger
Zohar Yakhini
Remo Rohs
Eran Segal

First Published March 11, 2015

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