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Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith
Chunyu Zhao
Veronika Dubinkina
Xiaofan Jin
Liron Zahavi
Saar Shoer
Jacqueline Moltzau-Anderson
Eran Segal
Katherine S. Pollard

First Published April 10, 2025

Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data

Li Song
Gali Bai
X. Shirley Liu
Bo Li
Heng Li

First Published May 11, 2023

Sequence determinants of polyadenylation-mediated regulation

Ilya Vainberg Slutskin
Adina Weinberger
Eran Segal

First Published September 17, 2019

Systematic interrogation of human promoters

Shira Weingarten-Gabbay
Ronit Nir
Shai Lubliner
Eilon Sharon
Yael Kalma
Adina Weinberger
Eran Segal

First Published January 8, 2019

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published March 1, 2017

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published December 13, 2016

cis-regulation with a compendium of genome-wide histone H3K27ac profiles" > Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles

Su Wang
Chongzhi Zang
Tengfei Xiao
Jingyu Fan
Shenglin Mei
Qian Qin Qiu Wu Xujuan Li Kexin Xu
... [+4 authors] ...,
Housheng Hansen He
Myles Brown
Clifford A. Meyer
X. Shirley Liu

First Published July 27, 2016

Noise in gene expression is coupled to growth rate

Leeat Keren
David van Dijk
Shira Weingarten-Gabbay
Dan Davidi
Ghil Jona
Adina Weinberger
Ron Milo
Eran Segal

First Published September 9, 2015

Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site

Michal Levo
Einat Zalckvar
Eilon Sharon
Ana Carolina Dantas Machado
Yael Kalma
Maya Lotan-Pompan
... [+1 authors] ...,
Adina Weinberger
Zohar Yakhini
Remo Rohs
Eran Segal

First Published September 1, 2015

Sequence determinants of improved CRISPR sgRNA design

Han Xu
Tengfei Xiao
Chen-Hao Chen
Wei Li
Clifford A. Meyer
Qiu Wu Di Wu Le Cong
... [+3 authors] ...,
Feng Zhang
Jun S. Liu
Myles Brown
X. Shirley Liu

First Published June 10, 2015

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