Research
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
- First Published April 10, 2025
Method
MCHelper automatically curates transposable element libraries across eukaryotic species
- First Published December 9, 2024
Method
Ultrafast genome-wide inference of pairwise coalescence times
- First Published August 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Method
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
- First Published December 16, 2016
Resource
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
- First Published November 30, 2016
Research
Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites
- First Published June 8, 2012
Resource
Efficient de novo assembly of large genomes using compressed data structures
- First Published December 7, 2011
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Method
Revealing the genetic structure of a trait by sequencing a population under selection
- First Published March 21, 2011
Resource
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- First Published October 27, 2010
Method
Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
- First Published September 1, 2010
Methods
A new strategy for genome assembly using short sequence reads and reduced representation libraries
- First Published February 1, 2010
Resource
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- First Published June 4, 2009
RESOURCE
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- First Published November 24, 2008
RESOURCE
Mapping short DNA sequencing reads and calling variants using mapping quality scores
- First Published August 19, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Methods
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
- First Published December 12, 2005
ARTICLE
Identification and Characterization of Multi-Species Conserved Sequences
- First Published December 1, 2003
METHODS
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
- First Published September 1, 2002
LETTER
A Comparative Molecular Analysis of Developing Mouse Forelimbs and Hindlimbs Using Serial Analysis of Gene Expression (SAGE)
- First Published September 20, 2001
LETTER
Alfresco—A Workbench for Comparative Genomic Sequence Analysis
- First Published August 1, 2000
METHODS
GeneWise in the Drosophila Annotation Experiment" > Using GeneWise in the Drosophila Annotation Experiment
- First Published April 1, 2000
LETTER
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
- First Published September 1, 1999
