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Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Method

MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II" > Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II

  • Paul J. Norman
  • Steven J. Norberg
  • Lisbeth A. Guethlein
  • Neda Nemat-Gorgani
  • Thomas Royce
  • Emily E. Wroblewski Tamsen Dunn Tobias Mann Claudia Alicata Jill A. Hollenbach Weihua Chang Melissa Shults Won
  • ... [+7 authors] ...,
  • Kevin L. Gunderson
  • Laurent Abi-Rached
  • Mostafa Ronaghi
  • Peter Parham
  • First Published March 30, 2017
Research

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis

  • Maxim Pimkin
  • Andrew V. Kossenkov
  • Tejaswini Mishra
  • Christapher S. Morrissey
  • Weisheng Wu
  • Cheryl A. Keller Gerd A. Blobel
  • ... [+2 authors] ...,
  • Dongwon Lee
  • Michael A. Beer
  • Ross C. Hardison
  • Mitchell J. Weiss
  • First Published October 15, 2014
Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

  • David U. Gorkin
  • Dongwon Lee
  • Xylena Reed
  • Christopher Fletez-Brant
  • Seneca L. Bessling
  • Stacie K. Loftus
  • Michael A. Beer
  • William J. Pavan
  • Andrew S. McCallion
  • First Published September 27, 2012
Method

Discriminative prediction of mammalian enhancers from DNA sequence

  • Dongwon Lee
  • Rachel Karchin
  • Michael A. Beer
  • First Published August 29, 2011
Article

Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes

  • Paul J. Norman
  • Laurent Abi-Rached
  • Ketevan Gendzekhadze
  • John A. Hammond
  • Achim K. Moesta
  • Deepti Sharma Thorsten Graef Karina L. McQueen Lisbeth A. Guethlein Christine V.F. Carrington Dasdayanee Chandanayingyong Yih-Hsin Chang Catalina Crespí Güher Saruhan-Direskeneli Kamran Hameed Giorgi Kamkamidze Kwadwo A. Koram Zulay Layrisse Nuria Matamoros Joan Milà Myoung Hee Park Ramasamy M. Pitchappan D. Dan Ramdath Ming-Yuh Shiau Henry A.F. Stephens Siske Struik Dolly Tyan David H. Verity Robert W. Vaughan Ronald W. Davis
  • ... [+25 authors] ...,
  • Patricia A. Fraser
  • Eleanor M. Riley
  • Mostafa Ronaghi
  • Peter Parham
  • First Published May 1, 2009
LETTER

KIR) loci in primates" > Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates

  • Jennifer G. Sambrook
  • Arman Bashirova
  • Sophie Palmer
  • Sarah Sims
  • John Trowsdale
  • Laurent Abi-Rached
  • Peter Parham
  • Mary Carrington
  • Stephan Beck
  • First Published January 3, 2005
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