Search | Genome Research

Perspective

The Topological Regulatory Logic of noncoding RNA–mediated gene expression

Thomas R. Gingeras

First Published June 17, 2026

Method

Density separation of petrous bone powders for optimized ancient DNA yields

Daniel M. Fernandes
Kendra A. Sirak
Olivia Cheronet
Mario Novak
Florian Brück
Evelyn Zelger Alejandro Llanos-Lizcano Anna Wagner Anna Zettl Kirsten Mandl Kellie Sara Duffet Carlson Victoria Oberreiter Kadir T. Özdoğan Susanna Sawyer Francesco La Pastina Emanuela Borgia Alfredo Coppa Miroslav Dobeš
... [+13 authors] ...,
Petr Velemínský
David Reich
Lynne S. Bell
Ron Pinhasi

First Published April 18, 2023

Method

Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs

Nadin Rohland
Swapan Mallick
Matthew Mah
Robert Maier
Nick Patterson
David Reich

First Published December 14, 2022

Method

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

Romualdas Vaisvila
V.K. Chaithanya Ponnaluri
Zhiyi Sun
Bradley W. Langhorst
Lana Saleh
Shengxi Guan Nan Dai Matthew A. Campbell Brittany S. Sexton Katherine Marks Mala Samaranayake James C. Samuelson Heidi E. Church Esta Tamanaha Ivan R. Corrêa Sriharsa Pradhan
... [+11 authors] ...,
Eileen T. Dimalanta
Thomas C. Evans
Louise Williams
Theodore B. Davis

First Published June 17, 2021

Method

A minimally destructive protocol for DNA extraction from ancient teeth

Éadaoin Harney
Olivia Cheronet
Daniel M. Fernandes
Kendra Sirak
Matthew Mah
Rebecca Bernardos Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Ann Marie Lawson Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Francesca Candilio Mihai Constantinescu Alfredo Coppa Ion Ciobanu János Dani Zsolt Gallina Francesco Genchi Emese Gyöngyvér Nagy Tamás Hajdu Magdolna Hellebrandt Antónia Horváth Ágnes Király Krisztián Kiss Barbara Kolozsi Péter Kovács Kitti Köhler Michaela Lucci Ildikó Pap Sergiu Popovici Pál Raczky Angela Simalcsik Tamás Szeniczey Sergey Vasilyev
... [+32 authors] ...,
Cristian Virag
Nadin Rohland
David Reich
Ron Pinhasi

First Published February 12, 2021

Resource

A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Corrigendum

Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA

Kendra Sirak
Daniel Fernandes
Olivia Cheronet
Eadaoin Harney
Matthew Mah
Swapan Mallick Nadin Rohland Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Francesca Candilio Ann Marie Lawson Kirsten Mandl Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Juraj Bartík Alfredo Coppa Tumen Dashtseveg Sándor Évinger Zdeněk Farkaš Tamás Hajdu Jamsranjav Bayarsaikhan Lauren McIntyre Vyacheslav Moiseyev Mercedes Okumura Ildikó Pap Michael Pietrusewsky Pál Raczky Alena Šefčáková Andrei Soficaru Tamás Szeniczey Béla Miklós Szőke Dennis Van Gerven
... [+30 authors] ...,
Sergey Vasilyev
Lynne Bell
David Reich
Ron Pinhasi

First Published July 14, 2020

Method

Human auditory ossicles as an alternative optimal source of ancient DNA

Kendra Sirak
Daniel Fernandes
Olivia Cheronet
Eadaoin Harney
Matthew Mah
Swapan Mallick Nadin Rohland Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Francesca Candilio Ann Marie Lawson Kirsten Mandl Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Juraj Bartík Alfredo Coppa Tumen Dashtseveg Sándor Évinger Zdeněk Farkaš Tamás Hajdu Jamsranjav Bayarsaikhan Lauren McIntyre Vyacheslav Moiseyev Mercedes Okumura Ildikó Pap Michael Pietrusewsky Pál Raczky Alena Šefčáková Andrei Soficaru Tamás Szeniczey Béla Miklós Szőke Dennis Van Gerven
... [+30 authors] ...,
Sergey Vasilyev
Lynne Bell
David Reich
Ron Pinhasi

First Published February 25, 2020

Resource

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Research

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

Xiao-Ou Zhang
Thomas R. Gingeras
Zhiping Weng

First Published August 14, 2019

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Your search for returned 34 results

Perspective

The Topological Regulatory Logic of noncoding RNA–mediated gene expression

Method

Density separation of petrous bone powders for optimized ancient DNA yields

Method

Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs

Method

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

Method

A minimally destructive protocol for DNA extraction from ancient teeth

Resource

A limited set of transcriptional programs define major cell types

Corrigendum

Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA

Method

Human auditory ossicles as an alternative optimal source of ancient DNA

Resource

Dynamics of microRNA expression during mouse prenatal development

Research

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

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Your search for returned 34 results

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