Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Research
Replication timing networks reveal a link between transcription regulatory circuits and replication timing control
- First Published August 21, 2019
Research
Allele-specific control of replication timing and genome organization during development
- First Published May 7, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Research
Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
- First Published June 8, 2015
Method
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
- First Published February 12, 2015
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013