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Research

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control

  • First Published August 21, 2019
Research

Allele-specific control of replication timing and genome organization during development

  • First Published May 7, 2018
Research

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

  • First Published June 8, 2015
Research

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

  • First Published May 20, 2015
Method

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

  • First Published February 12, 2015
Research

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

  • First Published May 24, 2012
Article

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

  • First Published December 1, 2009
Letter

Complex selection on 5′ splice sites in intron-rich organisms

  • First Published September 10, 2009
LETTER

Evolution of protein domain promiscuity in eukaryotes

  • First Published January 29, 2008
LETTER

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • First Published May 10, 2007
LETTER

Evolutionarily conserved genes preferentially accumulate introns

  • First Published May 10, 2007
LETTER

Origins and impact of constraints in evolution of gene families

  • First Published October 19, 2006
LETTER

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

  • First Published January 5, 2004
LETTER

Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution

  • First Published October 2, 2003
LETTER

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

  • First Published July 1, 2002
LETTER

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

  • First Published May 16, 2002
LETTER

Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes

  • First Published March 13, 2001
ARTICLE

Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context

  • First Published February 8, 2001
LETTER

From Complete Genomes to Measures of Substitution Rate Variability Within and Between Proteins

  • First Published July 1, 2000
ARTICLE

The Bacterial Replicative Helicase DnaB Evolved from a RecA Duplication

  • First Published January 1, 2000
RESEARCH

Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell

  • First Published July 1, 1999
ARTICLE

Distribution of Protein Folds in the Three Superkingdoms of Life

  • First Published January 1, 1999
RESEARCH

Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the “Eukaryotic” Protein Kinase Superfamily

  • First Published October 1, 1998
RESEARCH

Analogous Enzymes: Independent Inventions in Enzyme Evolution

  • First Published August 1, 1998
REVIEW

Big Time for Small Genomes

  • First Published May 1, 1997
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