Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Method
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Research
A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci
- First Published March 24, 2022
Research
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans
- First Published October 19, 2021
Method
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Research
Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome
- First Published February 25, 2016
Method
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- First Published February 4, 2016
Resource
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Perspective
Reading TE leaves: New approaches to the identification of transposable element insertions
- First Published June 1, 2011
Letter
5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
- First Published August 3, 2009
Resource
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- First Published June 4, 2009
Letter
Mobile elements create structural variation: Analysis of a complete human genome
- First Published May 13, 2009
Methods
Targeted discovery of novel human exons by comparative genomics
- First Published November 7, 2007
RESOURCE
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
LETTER
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
- First Published September 4, 2007
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
LETTER
Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
- First Published May 10, 2007
ARTICLE
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
RESOURCE
Exploring relationships and mining data with the UCSC Gene Sorter
- First Published May 2, 2005
LETTER
Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification
- First Published May 2, 2005
LETTER
Reconstructing large regions of an ancestral mammalian genome in silico
- First Published December 1, 2004
LETTER
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
RESOURCE
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
- First Published April 1, 2004
ARTICLE
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
ARTICLE
Identification and Characterization of Multi-Species Conserved Sequences
- First Published December 1, 2003
LETTER
Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms
- First Published June 12, 2003
LETTER
Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry
- First Published April 1, 2003
ARTICLE
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
LETTER
Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms
- First Published April 1, 2002
METHODS
Assembly of the Working Draft of the Human Genome with GigAssembler
- First Published August 16, 2001
ARTICLE
Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements
- First Published October 1, 2000
LETTER
Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition
- First Published October 1, 2000
METHODS
Genie—Gene Finding in Drosophila melanogaster " > Genie—Gene Finding in Drosophila melanogaster
- First Published April 1, 2000