Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Corrigendum
Corrigendum: Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
- First Published June 24, 2022
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
- First Published April 12, 2022
Research
Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome
- First Published September 19, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Research
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- First Published August 30, 2012
