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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

  • Nicholas H. Putnam
  • Brendan L. O'Connell
  • Jonathan C. Stites
  • Brandon J. Rice
  • Marco Blanchette
  • Robert Calef Christopher J. Troll Andrew Fields Paul D. Hartley
  • ... [+4 authors] ...,
  • Charles W. Sugnet
  • David Haussler
  • Daniel S. Rokhsar
  • Richard E. Green
  • First Published February 4, 2016

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009

Domain shuffling and the evolution of vertebrates

  • Takeshi Kawashima
  • Shuichi Kawashima
  • Chisaki Tanaka
  • Miho Murai
  • Masahiko Yoneda
  • Nicholas H. Putnam
  • ... [+1 authors] ...,
  • Daniel S. Rokhsar
  • Minoru Kanehisa
  • Nori Satoh
  • Hiroshi Wada
  • First Published May 14, 2009

Rapid whole-genome mutational profiling using next-generation sequencing technologies

  • Douglas R. Smith
  • Aaron R. Quinlan
  • Heather E. Peckham
  • Kathryn Makowsky
  • Wei Tao
  • Betty Woolf Lei Shen William F. Donahue Nadeem Tusneem Michael P. Stromberg Donald A. Stewart Lu Zhang Swati S. Ranade Jason B. Warner Clarence C. Lee Brittney E. Coleman Zheng Zhang Stephen F. McLaughlin Joel A. Malek Jon M. Sorenson Alan P. Blanchard Jarrod Chapman David Hillman Feng Chen Daniel S. Rokhsar
  • ... [+20 authors] ...,
  • Kevin J. McKernan
  • Thomas W. Jeffries
  • Gabor T. Marth
  • Paul M. Richardson
  • First Published September 4, 2008

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  • Linda Z. Holland
  • Ricard Albalat
  • Kaoru Azumi
  • Èlia Benito-Gutiérrez
  • Matthew J. Blow
  • Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
  • ... [+55 authors] ...,
  • Nicholas H. Putnam
  • Daniel S. Rokhsar
  • Noriyuki Satoh
  • Peter W.H. Holland
  • First Published June 18, 2008

Ciona intestinalis" > Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis

  • Eiichi Shoguchi
  • Takeshi Kawashima
  • Yutaka Satou
  • Makoto Hamaguchi
  • Tadasu Sin-I
  • Yuji Kohara
  • Nik Putnam
  • Daniel S. Rokhsar
  • Nori Satoh
  • First Published December 14, 2005

Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications" > Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

  • Pierre Hilson
  • Joke Allemeersch
  • Thomas Altmann
  • Sébastien Aubourg
  • Alexandra Avon
  • Jim Beynon Rishikesh P. Bhalerao Frédérique Bitton Michel Caboche Bernard Cannoot Vasil Chardakov Cécile Cognet-Holliger Vincent Colot Mark Crowe Caroline Darimont Steffen Durinck Holger Eickhoff Andéol Falcon de Longevialle Edward E. Farmer Murray Grant Martin T.R. Kuiper Hans Lehrach Céline Léon Antonio Leyva Joakim Lundeberg Claire Lurin Yves Moreau Wilfried Nietfeld Javier Paz-Ares Philippe Reymond Pierre Rouzé Goran Sandberg Maria Dolores Segura Carine Serizet Alexandra Tabrett Ludivine Taconnat Vincent Thareau Paul Van Hummelen Steven Vercruysse Marnik Vuylsteke Magdalena Weingartner Peter J. Weisbeek
  • ... [+37 authors] ...,
  • Valtteri Wirta
  • Floyd R.A. Wittink
  • Marc Zabeau
  • Ian Small
  • First Published October 15, 2004
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