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Your search for returned 16 results

Method

Identification of complex genomic rearrangements in cancers using CouGaR

Misko Dzamba
Arun K. Ramani
Pawel Buczkowicz
Yue Jiang
Man Yu
Cynthia Hawkins
Michael Brudno

First Published November 14, 2016

Resource

Alignathon: a competitive assessment of whole-genome alignment methods

Dent Earl
Ngan Nguyen
Glenn Hickey
Robert S. Harris
Stephen Fitzgerald
Kathryn Beal Igor Seledtsov Vladimir Molodtsov Brian J. Raney Hiram Clawson Jaebum Kim Carsten Kemena Jia-Ming Chang Ionas Erb Alexander Poliakov Minmei Hou Javier Herrero William James Kent Victor Solovyev Aaron E. Darling Jian Ma Cedric Notredame
... [+17 authors] ...,
Michael Brudno
Inna Dubchak
David Haussler
Benedict Paten

First Published October 1, 2014

Method

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

Ilari Scheinin
Daoud Sie
Henrik Bengtsson
Mark A. van de Wiel
Adam B. Olshen
Hinke F. van Thuijl Hendrik F. van Essen Paul P. Eijk François Rustenburg Gerrit A. Meijer Jaap C. Reijneveld
... [+6 authors] ...,
Pieter Wesseling
Daniel Pinkel
Donna G. Albertson
Bauke Ylstra

First Published September 18, 2014

Method

iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data

Aziz M. Mezlini
Eric J.M. Smith
Marc Fiume
Orion Buske
Gleb L. Savich
Sohrab Shah
... [+1 authors] ...,
Sam Aparicio
Derek Y. Chiang
Anna Goldenberg
Michael Brudno

First Published November 29, 2012

Resource

Detecting copy number variation with mated short reads

Paul Medvedev
Marc Fiume
Misko Dzamba
Tim Smith
Michael Brudno

First Published August 30, 2010

Resource

Multiple whole-genome alignments without a reference organism

Inna Dubchak
Alexander Poliakov
Andrey Kislyuk
Michael Brudno

First Published January 28, 2009

Methods

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

Antoine M. Snijders
Norma J. Nowak
Bing Huey
Jane Fridlyand
Sindy Law
Jeffrey Conroy Taku Tokuyasu Kubilay Demir Readman Chiu Jian-Hua Mao Ajay N. Jain
... [+6 authors] ...,
Steven J.M. Jones
Allan Balmain
Daniel Pinkel
Donna G. Albertson

First Published February 1, 2005

RESOURCE

ProbCons: Probabilistic consistency-based multiple sequence alignment

Chuong B. Do
Mahathi S.P. Mahabhashyam
Michael Brudno
Serafim Batzoglou

First Published February 1, 2005

Methods

Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human

Michael Brudno
Alexander Poliakov
Asaf Salamov
Gregory M. Cooper
Arend Sidow
Edward M. Rubin
Victor Solovyev
Serafim Batzoglou
Inna Dubchak

First Published April 1, 2004

LETTER

Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes

Gregory M. Cooper
Michael Brudno
Eric A. Stone
Inna Dubchak
Serafim Batzoglou
Arend Sidow

First Published April 1, 2004

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