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Method

Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

  • Bin Zhao
  • John A. Lees
  • Hongjin Wu
  • Chao Yang
  • Daniel Falush
  • First Published May 30, 2023
Research

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

  • Marta Farré
  • Jaebum Kim
  • Anastasia A. Proskuryakova
  • Yang Zhang
  • Anastasia I. Kulemzina
  • Qiye Li Yang Zhou Yingqi Xiong Jennifer L. Johnson Polina L. Perelman Warren E. Johnson Wesley C. Warren Anna V. Kukekova Guojie Zhang Stephen J. O'Brien Oliver A. Ryder
  • ... [+11 authors] ...,
  • Alexander S. Graphodatsky
  • Jian Ma
  • Harris A. Lewin
  • Denis M. Larkin
  • First Published February 13, 2019
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Method

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

  • Can Alkan
  • Maria Francesca Cardone
  • Claudia Rita Catacchio
  • Francesca Antonacci
  • Stephen J. O'Brien
  • Oliver A. Ryder Stefania Purgato
  • ... [+2 authors] ...,
  • Monica Zoli
  • Giuliano Della Valle
  • Evan E. Eichler
  • Mario Ventura
  • First Published November 16, 2010
Commentary

Every genome sequence needs a good map

  • Harris A. Lewin
  • Denis M. Larkin
  • Joan Pontius
  • Stephen J. O'Brien
  • First Published July 13, 2009
Methods

Inferring genomic flux in bacteria

  • Xavier Didelot
  • Aaron Darling
  • Daniel Falush
  • First Published November 17, 2008
LETTER

Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?" > A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

  • Xavier Didelot
  • Mark Achtman
  • Julian Parkhill
  • Nicholas R. Thomson
  • Daniel Falush
  • First Published November 7, 2006
LETTER

LIX1 function for motor neuron survival" > An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival

  • John C. Fyfe
  • Marilyn Menotti-Raymond
  • Victor A. David
  • Lars Brichta
  • Alejandro A. Schäffer
  • Richa Agarwala William J. Murphy William J. Wedemeyer Brittany L. Gregory
  • ... [+4 authors] ...,
  • Bethany G. Buzzell
  • Meghan C. Drummond
  • Brunhilde Wirth
  • Stephen J. O'Brien
  • First Published August 9, 2006
ARTICLE

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

  • Francisco M. De La Vega
  • Hadar Isaac
  • Andrew Collins
  • Charles R. Scafe
  • Bjarni V. Halldórsson
  • Xiaoping Su Ross A. Lippert Yu Wang Marion Laig-Webster Ryan T. Koehler Janet S. Ziegle Lewis T. Wogan Junko F. Stevens Kyle M. Leinen Sheri J. Olson Karl J. Guegler Xiaoqing You Lily H. Xu Heinz G. Hemken Francis Kalush Mitsuo Itakura Yi Zheng Guy de Thé Stephen J. O'Brien Andrew G. Clark
  • ... [+20 authors] ...,
  • Sorin Istrail
  • Michael W. Hunkapiller
  • Eugene G. Spier
  • Dennis A. Gilbert
  • First Published March 21, 2005
LETTER

The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals

  • William J. Murphy
  • Lutz Frönicke
  • Stephen J. O'Brien
  • Roscoe Stanyon
  • First Published July 17, 2003
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