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Method

Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

  • Bin Zhao
  • John A. Lees
  • Hongjin Wu
  • Chao Yang
  • Daniel Falush
  • First Published May 30, 2023
Methods

Inferring genomic flux in bacteria

  • Xavier Didelot
  • Aaron Darling
  • Daniel Falush
  • First Published November 17, 2008
LETTER

Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?" > A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

  • Xavier Didelot
  • Mark Achtman
  • Julian Parkhill
  • Nicholas R. Thomson
  • Daniel Falush
  • First Published November 7, 2006
LETTER

Comparative Analysis of Apicomplexa and Genomic Diversity in Eukaryotes

  • Thomas J. Templeton
  • Lakshminarayan M. Iyer
  • Vivek Anantharaman
  • Shinichiro Enomoto
  • Juan E. Abrahante
  • G.M. Subramanian
  • Stephen L. Hoffman
  • Mitchell S. Abrahamsen
  • L. Aravind
  • First Published September 1, 2004
INSIGHT/OUTLOOK

Intraproteomic Networks: New Forays Into Predicting Interaction Partners

  • L. Aravind
  • Lakshminarayan M. Iyer
  • First Published August 1, 2002
LETTER

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

  • Olivier Lespinet
  • Yuri I. Wolf
  • Eugene V. Koonin
  • L. Aravind
  • First Published July 1, 2002
LETTER

Prokaryotic Homologs of the Eukaryotic DNA-End-Binding Protein Ku, Novel Domains in the Ku Protein and Prediction of a Prokaryotic Double-Strand Break Repair System

  • L. Aravind
  • Eugene V. Koonin
  • First Published August 1, 2001
LETTER

Prediction of the Archaeal Exosome and Its Connections with the Proteasome and the Translation and Transcription Machineries by a Comparative-Genomic Approach

  • Eugene V. Koonin
  • Yuri I. Wolf
  • L. Aravind
  • First Published February 1, 2001
INSIGHT/OUTLOOK

Guilt by Association: Contextual Information in Genome Analysis

  • L. Aravind
  • First Published August 1, 2000
LETTER

Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System

  • L. Aravind
  • Eugene V. Koonin
  • First Published August 1, 2000
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