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Your search for returned 9 results

Resource

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

William K.M. Lai
Luca Mariani
Gerson Rothschild
Edwin R. Smith
Bryan J. Venters
Thomas R. Blanda Prashant K. Kuntala Kylie Bocklund Joshua Mairose Sarah N. Dweikat Katelyn Mistretta Matthew J. Rossi Daniela James James T. Anderson Sabrina K. Phanor Wanwei Zhang Zibo Zhao Avani P. Shah Katherine Novitzky Eileen McAnarney Michael-C. Keogh
... [+16 authors] ...,
Ali Shilatifard
Uttiya Basu
Martha L. Bulyk
B. Franklin Pugh

First Published August 23, 2021

Method

MEDEA: analysis of transcription factor binding motifs in accessible chromatin

Luca Mariani
Kathryn Weinand
Stephen S. Gisselbrecht
Martha L. Bulyk

First Published May 18, 2020

Methods

Distinguishing direct versus indirect transcription factor–DNA interactions

Raluca Gordân
Alexander J. Hartemink
Martha L. Bulyk

First Published August 3, 2009

Article

High-resolution DNA-binding specificity analysis of yeast transcription factors

Cong Zhu
Kelsey J.R.P. Byers
Rachel Patton McCord
Zhenwei Shi
Michael F. Berger
Daniel E. Newburger Katrina Saulrieta Zachary Smith Mita V. Shah Mathangi Radhakrishnan Anthony A. Philippakis Yanhui Hu Federico De Masi Marcin Pacek
... [+9 authors] ...,
Andreas Rolfs
Tal Murthy
Joshua LaBaer
Martha L. Bulyk

First Published January 21, 2009

RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

Daniel Blankenberg
James Taylor
Ian Schenck
Jianbin He
Yi Zhang
Matthew Ghent Narayanan Veeraraghavan Istvan Albert
... [+3 authors] ...,
Webb Miller
Kateryna D. Makova
Ross C. Hardison
Anton Nekrutenko

First Published June 13, 2007

RESOURCE

Saccharomyces cerevisiae" > Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae

Yanhui Hu
Andreas Rolfs
Bhupinder Bhullar
Tellamraju V. S. Murthy
Cong Zhu
Michael F. Berger Anamaria A. Camargo Fontina Kelley Seamus McCarron Daniel Jepson Aaron Richardson Jacob Raphael Donna Moreira Elena Taycher Dongmei Zuo Stephanie Mohr Michael F. Kane Janice Williamson Andrew Simpson Martha L. Bulyk
... [+15 authors] ...,
Edward Harlow
Gerald Marsischky
Richard D. Kolodner
Joshua LaBaer

First Published February 23, 2007

RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
Cathy Riemer
Ross C. Hardison
Richard Burhans
Laura Elnitski
Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
... [+4 authors] ...,
James Taylor
Webb Miller
W. James Kent
Anton Nekrutenko

First Published September 16, 2005

ARTICLE

Escherichia coli" > A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli

Martha L. Bulyk
Abigail M. McGuire
Nobuhisa Masuda
George M. Church

First Published February 2, 2004