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Resource

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

  • R. Jay Mashl
  • Adam D. Scott
  • Kuan-lin Huang
  • Matthew A. Wyczalkowski
  • Christopher J. Yoon
  • Beifang Niu Erin DeNardo Venkata D. Yellapantula Robert E. Handsaker Ken Chen Daniel C. Koboldt Kai Ye
  • ... [+7 authors] ...,
  • David Fenyö
  • Benjamin J. Raphael
  • Michael C. Wendl
  • Li Ding
  • First Published May 18, 2017
Method

TIGRA: A targeted iterative graph routing assembler for breakpoint assembly

  • Ken Chen
  • Lei Chen
  • Xian Fan
  • John Wallis
  • Li Ding
  • George Weinstock
  • First Published December 4, 2013
Research

Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

  • David H. Gutmann
  • Michael D. McLellan
  • Ibrahim Hussain
  • John W. Wallis
  • Lucinda L. Fulton
  • Robert S. Fulton Vincent Magrini Ryan Demeter Todd Wylie Cyriac Kandoth Jeffrey R. Leonard
  • ... [+6 authors] ...,
  • Abhijit Guha
  • Christopher A. Miller
  • Li Ding
  • Elaine R. Mardis
  • First Published December 5, 2012
Resource

MuSiC: Identifying mutational significance in cancer genomes

  • Nathan D. Dees
  • Qunyuan Zhang
  • Cyriac Kandoth
  • Michael C. Wendl
  • William Schierding
  • Daniel C. Koboldt Thomas B. Mooney Matthew B. Callaway
  • ... [+3 authors] ...,
  • David Dooling
  • Elaine R. Mardis
  • Richard K. Wilson
  • Li Ding
  • First Published July 3, 2012
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • Webb Miller
  • Kate Rosenbloom
  • Ross C. Hardison
  • Minmei Hou
  • James Taylor
  • Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
  • ... [+17 authors] ...,
  • Eric S. Lander
  • Adam Siepel
  • David Haussler
  • W. James Kent
  • First Published November 5, 2007
RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • Daniel Blankenberg
  • James Taylor
  • Ian Schenck
  • Jianbin He
  • Yi Zhang
  • Matthew Ghent Narayanan Veeraraghavan Istvan Albert
  • ... [+3 authors] ...,
  • Webb Miller
  • Kateryna D. Makova
  • Ross C. Hardison
  • Anton Nekrutenko
  • First Published June 13, 2007
RESOURCE

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

  • Ken Chen
  • Michael D. McLellan
  • Li Ding
  • Michael C. Wendl
  • Yumi Kasai
  • Richard K. Wilson
  • Elaine R. Mardis
  • First Published April 6, 2007
RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

  • Belinda Giardine
  • Cathy Riemer
  • Ross C. Hardison
  • Richard Burhans
  • Laura Elnitski
  • Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
  • ... [+4 authors] ...,
  • James Taylor
  • Webb Miller
  • W. James Kent
  • Anton Nekrutenko
  • First Published September 16, 2005
RESOURCE

EAnnot: A genome annotation tool using experimental evidence

  • Li Ding
  • Aniko Sabo
  • Nicolas Berkowicz
  • Rekha R. Meyer
  • Yoram Shotland
  • Mark R. Johnson
  • Kymberlie H. Pepin
  • Richard K. Wilson
  • John Spieth
  • First Published December 1, 2004
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