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Methods

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

  • Emily Hodges
  • Andrew D. Smith
  • Jude Kendall
  • Zhenyu Xuan
  • Kandasamy Ravi
  • Michelle Rooks Michael Q. Zhang Kenny Ye Arindam Bhattacharjee Leonardo Brizuela
  • ... [+5 authors] ...,
  • W. Richard McCombie
  • Michael Wigler
  • Gregory J. Hannon
  • James B. Hicks
  • First Published July 6, 2009
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • Webb Miller
  • Kate Rosenbloom
  • Ross C. Hardison
  • Minmei Hou
  • James Taylor
  • Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
  • ... [+17 authors] ...,
  • Eric S. Lander
  • Adam Siepel
  • David Haussler
  • W. James Kent
  • First Published November 5, 2007
RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • Daniel Blankenberg
  • James Taylor
  • Ian Schenck
  • Jianbin He
  • Yi Zhang
  • Matthew Ghent Narayanan Veeraraghavan Istvan Albert
  • ... [+3 authors] ...,
  • Webb Miller
  • Kateryna D. Makova
  • Ross C. Hardison
  • Anton Nekrutenko
  • First Published June 13, 2007
RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

  • Belinda Giardine
  • Cathy Riemer
  • Ross C. Hardison
  • Richard Burhans
  • Laura Elnitski
  • Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
  • ... [+4 authors] ...,
  • James Taylor
  • Webb Miller
  • W. James Kent
  • Anton Nekrutenko
  • First Published September 16, 2005
RESOURCE

Pseudomonas aeruginosa PA01 Gene Collection" > The Pseudomonas aeruginosa PA01 Gene Collection

  • Joshua LaBaer
  • QingQing Qiu
  • Anukanth Anumanthan
  • Wenhong Mar
  • Dongmei Zuo
  • T.V.S. Murthy Helen Taycher
  • ... [+2 authors] ...,
  • Allison Halleck
  • Eugenie Hainsworth
  • Stephen Lory
  • Leonardo Brizuela
  • First Published October 15, 2004
LETTER

P. falciparum Functional Molecules by Recombinational Cloning" > High-Throughput Generation of P. falciparum Functional Molecules by Recombinational Cloning

  • João Carlos Aguiar
  • Joshua LaBaer
  • Peter L. Blair
  • Victoria Y. Shamailova
  • Malvika Koundinya
  • Joshua A. Russell Fengying Huang Wenhong Mar Robert M. Anthony Adam Witney Sonia R. Caruana
  • ... [+6 authors] ...,
  • Leonardo Brizuela
  • John B. Sacci
  • Stephen L. Hoffman
  • Daniel J. Carucci
  • First Published October 15, 2004
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