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Resource

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

Catherine Adamidi
Yongbo Wang
Dominic Gruen
Guido Mastrobuoni
Xintian You
Dominic Tolle Matthias Dodt Sebastian D. Mackowiak Andreas Gogol-Doering Pinar Oenal Agnieszka Rybak Eric Ross Alejandro Sánchez Alvarado
... [+8 authors] ...,
Stefan Kempa
Christoph Dieterich
Nikolaus Rajewsky
Wei Chen

First Published May 2, 2011

RESOURCE

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

Brandi L. Cantarel
Ian Korf
Sofia M.C. Robb
Genis Parra
Eric Ross
Barry Moore
Carson Holt
Alejandro Sánchez Alvarado
Mark Yandell

First Published November 19, 2007

RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

Daniel Blankenberg
James Taylor
Ian Schenck
Jianbin He
Yi Zhang
Matthew Ghent Narayanan Veeraraghavan Istvan Albert
... [+3 authors] ...,
Webb Miller
Kateryna D. Makova
Ross C. Hardison
Anton Nekrutenko

First Published June 13, 2007

RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
Cathy Riemer
Ross C. Hardison
Richard Burhans
Laura Elnitski
Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
... [+4 authors] ...,
James Taylor
Webb Miller
W. James Kent
Anton Nekrutenko

First Published September 16, 2005