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Research

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

  • Axel M. Hillmer
  • Fei Yao
  • Koichiro Inaki
  • Wah Heng Lee
  • Pramila N. Ariyaratne
  • Audrey S.M. Teo Xing Yi Woo Zhenshui Zhang Hao Zhao Leena Ukil Jieqi P. Chen Feng Zhu Jimmy B.Y. So Manuel Salto-Tellez Wan Ting Poh Kelson F.B. Zawack Niranjan Nagarajan Song Gao Guoliang Li Vikrant Kumar Hui Ping J. Lim Yee Yen Sia Chee Seng Chan See Ting Leong Say Chuan Neo Poh Sum D. Choi Hervé Thoreau Patrick B.O. Tan Atif Shahab Xiaoan Ruan Jonas Bergh Per Hall Valère Cacheux-Rataboul Chia-Lin Wei Khay Guan Yeoh
  • ... [+30 authors] ...,
  • Wing-Kin Sung
  • Guillaume Bourque
  • Edison T. Liu
  • Yijun Ruan
  • First Published April 5, 2011
Method

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

  • Lukas Chavez
  • Justyna Jozefczuk
  • Christina Grimm
  • Jörn Dietrich
  • Bernd Timmermann
  • Hans Lehrach
  • Ralf Herwig
  • James Adjaye
  • First Published August 27, 2010
Letter

Dynamic changes in the human methylome during differentiation

  • Louise Laurent
  • Eleanor Wong
  • Guoliang Li
  • Tien Huynh
  • Aristotelis Tsirigos
  • Chin Thing Ong Hwee Meng Low
  • ... [+2 authors] ...,
  • Ken Wing Kin Sung
  • Isidore Rigoutsos
  • Jeanne Loring
  • Chia-Lin Wei
  • First Published February 4, 2010
Letter

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

  • Andrew L. Hufton
  • Susanne Mathia
  • Helene Braun
  • Udo Georgi
  • Hans Lehrach
  • Martin Vingron
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published August 24, 2009
Next-Generation DNA Sequencing/Review

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

  • Melissa J. Fullwood
  • Chia-Lin Wei
  • Edison T. Liu
  • Yijun Ruan
  • First Published April 1, 2009
LETTER

Evolution of the mammalian transcription factor binding repertoire via transposable elements

  • Guillaume Bourque
  • Bernard Leong
  • Vinsensius B. Vega
  • Xi Chen
  • Yen Ling Lee
  • Kandhadayar G. Srinivasan Joon-Lin Chew
  • ... [+2 authors] ...,
  • Yijun Ruan
  • Chia-Lin Wei
  • Huck Hui Ng
  • Edison T. Liu
  • First Published August 5, 2008
LETTER

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton
  • Detlef Groth
  • Martin Vingron
  • Hans Lehrach
  • Albert J. Poustka
  • Georgia Panopoulou
  • First Published July 14, 2008
LETTER

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

  • Yijun Ruan
  • Hong Sain Ooi
  • Siew Woh Choo
  • Kuo Ping Chiu
  • Xiao Dong Zhao
  • K.G. Srinivasan Fei Yao Chiou Yu Choo Jun Liu Pramila Ariyaratne Wilson G.W. Bin Vladimir A. Kuznetsov Atif Shahab
  • ... [+8 authors] ...,
  • Wing-Kin Sung
  • Guillaume Bourque
  • Nallasivam Palanisamy
  • Chia-Lin Wei
  • First Published June 13, 2007
Methods

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

  • Ghia M. Euskirchen
  • Joel S. Rozowsky
  • Chia-Lin Wei
  • Wah Heng Lee
  • Zhengdong D. Zhang
  • Stephen Hartman Olof Emanuelsson Viktor Stolc
  • ... [+3 authors] ...,
  • Sherman Weissman
  • Mark B. Gerstein
  • Yijun Ruan
  • Michael Snyder
  • First Published June 13, 2007
RESOURCE

Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications" > Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

  • Pierre Hilson
  • Joke Allemeersch
  • Thomas Altmann
  • Sébastien Aubourg
  • Alexandra Avon
  • Jim Beynon Rishikesh P. Bhalerao Frédérique Bitton Michel Caboche Bernard Cannoot Vasil Chardakov Cécile Cognet-Holliger Vincent Colot Mark Crowe Caroline Darimont Steffen Durinck Holger Eickhoff Andéol Falcon de Longevialle Edward E. Farmer Murray Grant Martin T.R. Kuiper Hans Lehrach Céline Léon Antonio Leyva Joakim Lundeberg Claire Lurin Yves Moreau Wilfried Nietfeld Javier Paz-Ares Philippe Reymond Pierre Rouzé Goran Sandberg Maria Dolores Segura Carine Serizet Alexandra Tabrett Ludivine Taconnat Vincent Thareau Paul Van Hummelen Steven Vercruysse Marnik Vuylsteke Magdalena Weingartner Peter J. Weisbeek
  • ... [+37 authors] ...,
  • Valtteri Wirta
  • Floyd R.A. Wittink
  • Marc Zabeau
  • Ian Small
  • First Published October 15, 2004
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