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Editorial

RECOMB 2025 Special Issue

Sriram Sankararaman
Bonnie Berger

First Published December 3, 2025

Method

Graph-based deep reinforcement learning for haplotype assembly with Ralphi

Enzo Battistella
Anant Maheshwari
Barış Ekim
Bonnie Berger
Victoria Popic

First Published November 14, 2025

Method

Optimal marker genes for c-separated cell types with SepSolve

Bartol Borozan
Tomislav Prusina
Luka Borozan
Domagoj Ševerdija
Francisca Rojas Ringeling
Domagoj Matijević
Stefan Canzar

First Published October 9, 2025

Method

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith
Chunyu Zhao
Veronika Dubinkina
Xiaofan Jin
Liron Zahavi
Saar Shoer
Jacqueline Moltzau-Anderson
Eran Segal
Katherine S. Pollard

First Published April 10, 2025

Editorial

Innovations in computational biology: RECOMB 2024 Special Issue

Jian Ma
Bonnie Berger

First Published October 11, 2024

Method

Secure discovery of genetic relatives across large-scale and distributed genomic data sets

Matthew M. Hong
David Froelicher
Ricky Magner
Victoria Popic
Bonnie Berger
Hyunghoon Cho

First Published August 7, 2024

Method

Efficient minimizer orders for large values of k using minimum decycling sets

David Pellow
Lianrong Pu
Bariş Ekim
Lior Kotlar
Bonnie Berger
Ron Shamir
Yaron Orenstein

First Published August 9, 2023

Method

Assessing transcriptomic reidentification risks using discriminative sequence models

Shuvom Sadhuka
Daniel Fridman
Bonnie Berger
Hyunghoon Cho

First Published August 4, 2023

Method

Efficient mapping of accurate long reads in minimizer space with mapquik

Bariş Ekim
Kristoffer Sahlin
Paul Medvedev
Bonnie Berger
Rayan Chikhi

First Published June 30, 2023

Research

Sequence determinants of polyadenylation-mediated regulation

Ilya Vainberg Slutskin
Adina Weinberger
Eran Segal

First Published September 17, 2019

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