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Geobacter sulfurreducens genome" > Structural and operational complexity of the Geobacter sulfurreducens genome

  • Yu Qiu
  • Byung-Kwan Cho
  • Young Seoub Park
  • Derek Lovley
  • Bernhard Ø. Palsson
  • Karsten Zengler
  • First Published June 30, 2010
LETTER

Escherichia coli indicates a causative role for A-/AT-tracts" > Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

  • Byung-Kwan Cho
  • Eric M. Knight
  • Christian L. Barrett
  • Bernhard Ø. Palsson
  • First Published March 13, 2008
LETTER

Systematic condition-dependent annotation of metabolic genes

  • Tomer Shlomi
  • Markus Herrgard
  • Vasiliy Portnoy
  • Efrat Naim
  • Bernhard Ø. Palsson
  • Roded Sharan
  • Eytan Ruppin
  • First Published September 25, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Saccharomyces cerevisiae" > Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

  • Markus J. Herrgård
  • Baek-Seok Lee
  • Vasiliy Portnoy
  • Bernhard Ø. Palsson
  • First Published April 10, 2006
LETTER

Escherichia coli lead to convergent growth phenotypes with different gene expression states" > Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

  • Stephen S. Fong
  • Andrew R. Joyce
  • Bernhard Ø. Palsson
  • First Published October 3, 2005
Methods

Escherichia coli-K12" > High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

  • Christiane Honisch
  • Anu Raghunathan
  • Charles R. Cantor
  • Bernhard Ø. Palsson
  • Dirk van den Boom
  • First Published December 1, 2004
LETTER

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing

  • Terrence S. Furey
  • Mark Diekhans
  • Yontao Lu
  • Tina A. Graves
  • Lachlan Oddy
  • Jennifer Randall-Maher
  • LaDeana W. Hillier
  • Richard K. Wilson
  • David Haussler
  • First Published October 15, 2004
Methods

E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States" > Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States

  • Jennifer L. Reed
  • Bernhard Ø. Palsson
  • First Published September 1, 2004
LETTER

Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model" > Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

  • Natalie C. Duarte
  • Markus J. Herrgård
  • Bernhard Ø. Palsson
  • First Published June 14, 2004
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